Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002162-TA|BGIBMGA002162-PA|IPR002126|Cadherin
         (900 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   6.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   8.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   8.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 375 DKFAINNAGEVILRRSLDYETTSNYFYQVMVTDSISNDTASI 416
           DK+ +   G  ++ +++DY  T  Y  Q      I+ D +S+
Sbjct: 448 DKYDLIGNGTKLIIKNVDYADTGAYMCQASSIGGITRDISSL 489


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 713 PATLKALAWDDHNKQSDLTNNDDNEISDTNNNLILD 748
           P+ L +    DHNK+    N+  N+ ++  N L ++
Sbjct: 46  PSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIE 81


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 728 SDLTNNDDNEISDTNNNLILDE--YLKANIMPMYPLPM 763
           S L+NN  + IS+ NNN   ++  Y   N +   P+P+
Sbjct: 83  SSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPV 120


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 707 WPAHTIPATLKALAWDDHNKQSDLTNNDDNEISDT--NNN 744
           WP   +  T+   +W   + +  L + D  +I D   NNN
Sbjct: 166 WPYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNN 205


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 728 SDLTNNDDNEISDTNNNLILDE--YLKANIMPMYPLPM 763
           S L+NN  + IS+ NNN   ++  Y   N +   P+P+
Sbjct: 321 SSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPV 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,819
Number of Sequences: 429
Number of extensions: 10606
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 900
length of database: 140,377
effective HSP length: 64
effective length of query: 836
effective length of database: 112,921
effective search space: 94401956
effective search space used: 94401956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)