GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002162-TA|BGIBMGA002162-PA|IPR002126|Cadherin
         (900 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    27   0.75 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   2.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           25   2.3  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    25   2.3  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 770 NLTDNVKLTKIVNTDFADDNQTSLSKEYCNPIEAINYCFPLQ 811
           NL  ++  +  +N D   ++Q +L  + CN I+  N CF LQ
Sbjct: 193 NLNTSLIHSTHLNGDIVKEHQ-NLHNKICNLIDEFNECFGLQ 233


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 846 PIAPILYDVAGPVLGIMYHDPPP 868
           P+ PILYD  G ++ + ++ P P
Sbjct: 188 PLTPILYDHIGDLVCVDFYGPLP 210


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 118 SETXXXXXXXXXXXXSDRDQPGPHSALHYAVLPGPHSEYLGFENE-LEPIIVVKKPLDFE 176
           S T            S    P PH    Y ++P    E L  ++  L    ++   L+F+
Sbjct: 127 SSTSSIPSPSTTDDLSTNPTPPPHYT--YQIIP---YEALNVDDHILSDPSLMDADLEFK 181

Query: 177 TVNNFTIKLRVQDQGSPPLYSDTTLQVTVLDADD 210
              + ++ L V D  SP +YS+ +L    +  DD
Sbjct: 182 GAQDLSL-LHVSDSLSPGIYSEQSLSPDTVFGDD 214


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 810 LQNYNQKKLSDNEYYFP 826
           L NYN  ++S+N YY P
Sbjct: 53  LVNYNVSEISENFYYLP 69


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,802
Number of Sequences: 317
Number of extensions: 7648
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 900
length of database: 114,650
effective HSP length: 63
effective length of query: 837
effective length of database: 94,679
effective search space: 79246323
effective search space used: 79246323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)