GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002162-TA|BGIBMGA002162-PA|IPR002126|Cadherin
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496...    32   1.8  

>08_02_0503 -
           17848739-17849004,17849109-17849268,17849368-17849691,
           17849787-17850209
          Length = 390

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 709 AHTIPATLKALAWDDHNKQSDLTNNDDNEISDTNNNLILDEYLKANIMPM 758
           A  +PAT+KA A+DD+   S L  ND   + D  ++ +L     A + P+
Sbjct: 75  AGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPV 124


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,385,138
Number of Sequences: 37544
Number of extensions: 920633
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 1
length of query: 900
length of database: 14,793,348
effective HSP length: 89
effective length of query: 811
effective length of database: 11,451,932
effective search space: 9287516852
effective search space used: 9287516852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)