Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002162-TA|BGIBMGA002162-PA|IPR002126|Cadherin
(900 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 32 2.0
At3g54580.1 68416.m06039 proline-rich extensin-like family prote... 32 2.0
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 31 2.6
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 31 2.6
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 31 3.4
At3g54590.1 68416.m06040 proline-rich extensin-like family prote... 31 3.4
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 3.4
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ... 31 3.4
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 31 3.4
At5g49080.1 68418.m06074 proline-rich extensin-like family prote... 31 4.5
At5g25300.1 68418.m03001 F-box family protein PF0064: F-box doma... 31 4.5
At4g08410.1 68417.m01390 proline-rich extensin-like family prote... 30 7.9
At4g08400.1 68417.m01388 proline-rich extensin-like family prote... 30 7.9
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 30 7.9
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 30 7.9
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 31.9 bits (69), Expect = 2.0
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAG 856
Y +P +NY P Y YY P K P P+ Y+ P P Y
Sbjct: 354 YYSPSPTVNYKSPPPPYVYNSPPPPPYYSPFPKVEYKSPPPPYI--YNSPPPPPYY---S 408
Query: 857 PVLGIMYHDPPPAYATINP 875
P I Y PPP Y P
Sbjct: 409 PSPKITYKSPPPPYIYKTP 427
>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 951
Score = 31.9 bits (69), Expect = 2.0
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPPAYATINPRKLHKHH 882
YY P K Y P P+ YS P P P + Y PPP Y + +P+ +K
Sbjct: 509 YYSPSPKVYYKSPPPPYV--YSSPPPPYY----SPSPKVYYKSPPPPYYSPSPKVYYKSP 562
Query: 883 VRPAVFT 889
P V++
Sbjct: 563 PPPYVYS 569
Score = 30.3 bits (65), Expect = 6.0
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPPAYATINPRKLHKHH 882
YY P K Y P P Y P + Y P +Y PPP Y + +P+ +K
Sbjct: 534 YYSPSPKVYYKSPPPP----YYSPSPKVYYKSPPPPY--VYSSPPPPYYSPSPKVYYKSP 587
Query: 883 VRPAVFT 889
P V++
Sbjct: 588 PPPYVYS 594
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 31.5 bits (68), Expect = 2.6
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPH-----DTGYSKPIAPIL 851
Y P +NY P Y YY P K Y P P+ Y P +
Sbjct: 67 YYTPSPKVNYKSPPPPYVYNS-PPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVY 125
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
Y P +Y PPP Y + +P+ +K P V++
Sbjct: 126 YKSPPPPY--VYSSPPPLYYSPSPKVYYKSPPPPYVYS 161
Score = 29.9 bits (64), Expect = 7.9
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPI----APILYDVAGPVLGIMYHDPPPAYATINPRKL 878
YY P K Y P P+ P+ +P +Y P +Y PPP Y + +P+
Sbjct: 117 YYSPSPKVYYKSPPPPYVYSSPPPLYYSPSPKVY-YKSPPPPYVYSSPPPPYYSPSPKVY 175
Query: 879 HKHHVRPAVFT 889
+K P V++
Sbjct: 176 YKSPPPPYVYS 186
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 31.5 bits (68), Expect = 2.6
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P ++Y P Y YY P K P P+ YS P P
Sbjct: 426 YYSPSPKVDYKSPPPPYVYSS-PPPPYYSPSPKVVYKSPPPPYV--YSSPPPPYYSPSPK 482
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + +P+ L+K P V++
Sbjct: 483 VDYKSPPPPYVYSSPPPPYYSPSPKVLYKSPPPPYVYS 520
Score = 30.3 bits (65), Expect = 6.0
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P ++Y P Y YY P K P P+ YS P P
Sbjct: 226 YYSPSPKVDYKSPPPPYVYSS-PPPPYYSPSPKIVYKSPPPPYV--YSSPPPPYYSPSPK 282
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + +P+ ++K P V++
Sbjct: 283 VDYKSPPPPYVYSSPPPPYYSPSPKVVYKSPPPPYVYS 320
Score = 29.9 bits (64), Expect = 7.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPPAYATINPRKLHKHH 882
Y P+ K P +P D YS P P+ Y P + Y PPP Y + +P+ +K
Sbjct: 34 YSVPLPKVEYKSPPLP-DV-YSSPPPPLEYS---PAPKVDYKSPPPPYYSPSPKVEYKSP 88
Query: 883 VRPAVF 888
P V+
Sbjct: 89 PPPYVY 94
Score = 29.9 bits (64), Expect = 7.9
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPH-----DTGYSKPIAPIL 851
Y +P ++Y P Y YY P K P P+ Y P I+
Sbjct: 326 YYSPTPKVDYKSPPPPYVYSS-PPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKIV 384
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
Y P +Y PPP Y T +P+ ++K P V++
Sbjct: 385 YKSPPPPY--VYSSPPPPYYTPSPKVVYKSPPPPYVYS 420
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 31.1 bits (67), Expect = 3.4
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P + Y P Y YY P K Y P P+ YS P P
Sbjct: 291 YYSPSPKVEYKSPPPPYVYSS-PPPPYYSPSPKVYYKSPPPPYV--YSSPPPPYYSPSPK 347
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + +P+ +K P V++
Sbjct: 348 VDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYS 385
>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 743
Score = 31.1 bits (67), Expect = 3.4
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPPAYATINPRKLHKHH 882
YY P K Y P P+ YS P P P + Y PPP Y + +P+ +K
Sbjct: 609 YYSPSPKVYYKSPPPPYV--YSSPPPPYY----SPSPKVYYKSPPPPYYSPSPKVYYKSP 662
Query: 883 VRPAV 887
P V
Sbjct: 663 PHPHV 667
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 58 TLLRALDREEKIGPSNVYVNVRCDRRRTTDPS 89
TLL L RE K G NV R +R +TDPS
Sbjct: 948 TLLVLLQREAKTGEDNVLAMGRSGKRSSTDPS 979
>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
similar to DNA-binding protein DF1 [Pisum sativum]
GI:13646986
Length = 603
Score = 31.1 bits (67), Expect = 3.4
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 724 HNKQSDLT---NNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDNVKLTKI 780
H +Q+ L NN++N ++ N+++ +MP LP + + NV
Sbjct: 157 HQQQTPLRPQQNNNNNNNNNNNSSIFSTPPPVTTVMPT--LPSSSIPPYTQQINVPSFPN 214
Query: 781 VNTDFADDNQTSLSKEY 797
++ DF DN TS S Y
Sbjct: 215 ISGDFLSDNSTSSSSSY 231
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 823 YYFPIEKSYGSVPIVPHDTGYSKPIAPILYDVAGPVLGIMYHDPPPAY 870
Y P E SY S P P T Y P+ + YD + P PPP+Y
Sbjct: 704 YEPPPEYSYSSSPPPPSPTSYFPPMPSVSYDASPP--------PPPSY 743
>At5g49080.1 68418.m06074 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 609
Score = 30.7 bits (66), Expect = 4.5
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P ++Y P Y YY P K P P+ YS P P
Sbjct: 211 YYSPSPKVDYKSPPPPYVYSS-PPPPYYSPTPKVDYKSPPPPYV--YSSPPPPYYSPSPK 267
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P L +Y PPP Y + +P+ +K P V++
Sbjct: 268 VDYKSPPLPYVYSSPPPPYYSPSPKVDYKSPPPPYVYS 305
>At5g25300.1 68418.m03001 F-box family protein PF0064: F-box domain;
similar to F-box protein family, AtFBX7 (GI:20197899)
[Arabidopsis thaliana]
Length = 464
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 364 LQFYVSDRSFLDKFAINNAGEVILRRSLDYETTSNYFYQVMVTDSISNDTASIN 417
+ FY+ F + A+ + EV+L ++ YETT +++ D + A+IN
Sbjct: 187 ISFYIDGARFSNNIAVTTSREVLLVQNFFYETTRYRSFRLYKKDPNPDLNATIN 240
>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 707
Score = 29.9 bits (64), Expect = 7.9
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P +NY P Y YY P K P P+ YS P P
Sbjct: 139 YYSPSPKVNYKSPPPPYVYSS-PPPPYYSPSPKGDYKSPPPPYV--YSSPPPPYYSPSPK 195
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + P+ +K P V++
Sbjct: 196 VDYKSPPPPYVYSSPPPPYYSPTPKVDYKSPPPPYVYS 233
Score = 29.9 bits (64), Expect = 7.9
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P +NY P Y YY P K P P+ YS P P
Sbjct: 539 YYSPSPKVNYKSPPPPYVYSS-PPPPYYSPSPKVEYKSPPPPYI--YSSPPPPYYAPSPK 595
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + +P+ +K P V++
Sbjct: 596 VDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYS 633
>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 513
Score = 29.9 bits (64), Expect = 7.9
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPIL----- 851
Y +P +NY P Y YY P K P P+ YS P P
Sbjct: 121 YYSPSPKVNYKSPPPPYVYSS-PPPPYYSPSPKGDYKSPPPPYV--YSSPPPPYYSPSPK 177
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
D P +Y PPP Y + P+ +K P V++
Sbjct: 178 VDYKSPPPPYVYSSPPPPYYSPTPKVDYKSPPPPYVYS 215
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 29.9 bits (64), Expect = 7.9
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 790 QTSLSKEYCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAP 849
++S +Y P +NY P Y YY P K P P+ YS P P
Sbjct: 54 KSSPPPQYYTPSPKVNYKSPPPPYVYSS-PPPPYYSPSPKVDYKSPPPPYV--YSSPPPP 110
Query: 850 IL-----YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVF 888
D P +Y PPP Y + +P+ +K P V+
Sbjct: 111 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVY 154
Score = 29.9 bits (64), Expect = 7.9
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPH-----DTGYSKPIAPIL 851
Y +P ++Y P Y YY P K Y P P+ Y P +
Sbjct: 161 YYSPSPKVDYKSPPPPYVYSS-PPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVY 219
Query: 852 YDVAGPVLGIMYHDPPPAYATINPRKLHKHHVRPAVFT 889
Y P +Y PPP Y + +P+ +K P V++
Sbjct: 220 YKSPPPPY--VYSSPPPPYYSPSPKVYYKSPPPPYVYS 255
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.9 bits (64), Expect = 7.9
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 797 YCNPIEAINYCFPLQNYNQKKLSDNEYYFPIEKSYGSVPIVPHDTGYSKPIAPILY---- 852
Y +P + Y P Y YY P K P P+ YS P P Y
Sbjct: 773 YYSPSPKVEYKSPPPPYVYSSPPPPPYYSPSPKVEYKSPPPPYV--YSSPPPPTYYSPSP 830
Query: 853 --DVAGPVLGIMYHDPPP-AYATINPRKLHKHHVRPAVFT 889
+ P +Y+ PPP AY + +P+ +K P V++
Sbjct: 831 KVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYS 870
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,375
Number of Sequences: 28952
Number of extensions: 742773
Number of successful extensions: 1565
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1423
Number of HSP's gapped (non-prelim): 219
length of query: 900
length of database: 12,070,560
effective HSP length: 88
effective length of query: 812
effective length of database: 9,522,784
effective search space: 7732500608
effective search space used: 7732500608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
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