Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002161-TA|BGIBMGA002161-PA|IPR001373|Cullin
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...   129   1e-30
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    83   1e-16
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    78   5e-15
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    36   0.014
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    30   0.93 
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    28   5.0  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   6.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   8.7  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score =  129 bits (312), Expect = 1e-30
 Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 4/209 (1%)

Query: 465 EDLSRMYQLVR--PLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAILT 522
           ED+ RMY+L+   P G   LR   +                      D     ++E +L+
Sbjct: 310 EDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAVAKIVPQVGGEADVDPKEYMEMLLS 369

Query: 523 LHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSR--SGEEACRAPELVARYCDWVLRRRP 580
            +    +L N  F G   F  +LD A   +VN        + R+PEL+A+Y D +LR+  
Sbjct: 370 TYKASKELVNTAFHGDTDFTKSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRKSN 429

Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
               + DV+D L++ I++F+Y++DKD+FQ  Y + LA+RL++  S S + E SM+++LK 
Sbjct: 430 KNVDIDDVEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKE 489

Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQ 669
            CG+E+T+KL RMF D+++S ++   F Q
Sbjct: 490 VCGFEYTSKLQRMFQDISLSQEITEAFWQ 518


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 44/152 (28%), Positives = 79/152 (51%)

Query: 517 VEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVL 576
           V+ +L+ H     + +E F   +    A+ KA    +N   G +      L+A+Y D++L
Sbjct: 332 VQELLSFHKFLQVVVDESFLHDETLSYAMRKAFETFINGAKGSQREAPARLIAKYIDYLL 391

Query: 577 RRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMIN 636
           R    A+    + +  +  + +F+YI  KDIF+ +Y   +A+RL+   S S + E  +++
Sbjct: 392 RVGEQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLD 451

Query: 637 RLKAACGYEFTNKLHRMFTDVAVSADLNAKFQ 668
            LK  CG +FT+ L  MF DV +S +  + F+
Sbjct: 452 MLKKTCGSQFTHSLEGMFRDVNISKEFTSSFR 483


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 43/153 (28%), Positives = 83/153 (54%), Gaps = 5/153 (3%)

Query: 516 FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWV 575
           +V+ +L L  + + + +      ++ + +L  A    V+  +     RAPE ++ + D  
Sbjct: 378 WVQKVLALWDRLNTIISTTMDADRSILNSLSDAFVTFVDGYT-----RAPEYISLFIDDN 432

Query: 576 LRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMI 635
           L++    A    ++  L  ++ +F++I +KD+F+K+Y   LA+RL++  S S + E  MI
Sbjct: 433 LKKDARKAIEGSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLNNRSISSDAELGMI 492

Query: 636 NRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQ 668
           +RLK   G  FT KL  MF D+ +S +L  +++
Sbjct: 493 SRLKQEAGNVFTQKLEGMFNDMNLSQELLQEYK 525


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 584 PLTDVDDK-LTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAAC 642
           P++D D+      I+V  Y   KD  Q  + + L+  +    S S  + ++++N  + + 
Sbjct: 178 PVSDSDESNYCQRIIVKPYSSQKDYTQSTHEQTLSSPISKSASVSKSENKALVNNKRYSD 237

Query: 643 GYEFTNKLHRMFTDV-AVSADLN 664
            Y + +K+ R+  DV  V  DLN
Sbjct: 238 SYFYFSKMRRISIDVDYVDEDLN 260


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 585 LTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMIN 636
           L  V DKL    V+F  I+    F   + R L +RLIH L  S EQ  + +N
Sbjct: 816 LNAVSDKLVNTAVLFINIELLSEFYYQFPRELDQRLIHSL--SSEQLNAFVN 865


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 44  KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRL 89
           K+ VD + Q+A  +G+KA+   V+      +  L  A+P+ L +++
Sbjct: 57  KVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 614 RALARRLIHQLSYSMEQEESMINRLKAACGYEFT 647
           R+L +  +H      + EE +INR+ A+ GY F+
Sbjct: 380 RSLPKVHVHCFCRFPDPEEDLINRIYASLGYRFS 413


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 12 ETWANLKETVSRQRNLFIHNIRGTRDPLTE 41
          E  +NLK  +S+Q N+++ +I+ + +  TE
Sbjct: 60 EYLSNLKPQLSKQENIYVKHIKSSNEAKTE 89


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,624
Number of Sequences: 5004
Number of extensions: 91464
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 9
length of query: 691
length of database: 2,362,478
effective HSP length: 78
effective length of query: 613
effective length of database: 1,972,166
effective search space: 1208937758
effective search space used: 1208937758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)