GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002161-TA|BGIBMGA002161-PA|IPR001373|Cullin
         (691 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   4.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   4.0  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   9.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   9.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   9.3  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 358 GCAVQYSTVQYSGCAVQHSGCAVQYSTVG 386
           GC +Q++T+ ++ C   +S      ST+G
Sbjct: 541 GCLIQFNTIVFAFCYCYYSISIRPISTLG 569


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 544 ALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPAAAPLTDVDDKLTAAIVVFKYID 603
           ++ + CS+ V S + E     P +           +   +P +D   +    +VV K +D
Sbjct: 812 SISERCSSRVESLTPERKMEPPGVPLNSTPRSTPDKREKSPTSDKAQEADGEVVVKKEVD 871

Query: 604 DKDIFQKHYARALAR 618
           +++  + H +  + R
Sbjct: 872 EEERLENHTSVKIKR 886


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWE 192
           +  +SA V  P       ++G++ L+ W+
Sbjct: 18  VTSSSALVMSPANSLASTDIGDVDLEFWD 46


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 363 YSTVQYSGCAVQHSGCAVQYSTVGVQYSTVGVQYRVQQVVSCA 405
           YS+   SG + QHS  +   S     Y  V   +   Q  + A
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 363 YSTVQYSGCAVQHSGCAVQYSTVGVQYSTVGVQYRVQQVVSCA 405
           YS+   SG + QHS  +   S     Y  V   +   Q  + A
Sbjct: 35  YSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,822
Number of Sequences: 317
Number of extensions: 4618
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 691
length of database: 114,650
effective HSP length: 61
effective length of query: 630
effective length of database: 95,313
effective search space: 60047190
effective search space used: 60047190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)