Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002161-TA|BGIBMGA002161-PA|IPR001373|Cullin
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0737 - 31328473-31330513,31331015-31331184 107 2e-23
04_04_1339 + 32760424-32760584,32762428-32764462 106 7e-23
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 104 2e-22
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 103 5e-22
08_01_0471 - 4147170-4149207,4150535-4150692 100 4e-21
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 91 2e-18
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 90 5e-18
05_03_0553 - 15389376-15389499,15391167-15391576 30 7.1
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 29 9.4
01_06_1821 + 40126389-40126508,40126589-40126646,40126782-401268... 29 9.4
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 107 bits (258), Expect = 2e-23
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 465 EDLSRMYQLVRPL--GPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAILT 522
+DL+RMY L R + G + +R ++ KD V FV+ +L
Sbjct: 288 DDLARMYNLFRRVFDGLSTIRDVM----TSYLRETGKQLVTDPERLKDPVE--FVQRLLN 341
Query: 523 LHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPAA 582
K+ K+ N FG + F AL+ + +N + R+PE ++ Y D LR+
Sbjct: 342 EKDKHDKIINVAFGNDKTFQNALNSSFEYFINLNN-----RSPEFISLYVDDKLRKGLKG 396
Query: 583 APLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAAC 642
A DV+ L +++F+Y+ +KD+F+K+Y + LA+RL+ + S + E SMI +LK C
Sbjct: 397 ATEEDVEVILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSMIVKLKTEC 456
Query: 643 GYEFTNKLHRMFTDVAVSADLNAKF 667
GY+FT+KL MFTD+ S D F
Sbjct: 457 GYQFTSKLEGMFTDMKTSQDTMIDF 481
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 106 bits (254), Expect = 7e-23
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 463 RREDLSRMYQLVR--PLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAI 520
+ EDLSRMY L + P G + +R ++ KD V FV+ +
Sbjct: 283 KHEDLSRMYNLFKRVPDGHSTIRSVM----ASHVKESGKALVSDPEKIKDPVE--FVQRL 336
Query: 521 LTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRP 580
L KY ++ + F +AF AL+ + +N + R+PE ++ + D LR+
Sbjct: 337 LNEKDKYDEIISISFSNDKAFQNALNSSFENFINLNN-----RSPEFISLFVDDKLRKGV 391
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
A DV+ L +++F+Y+ +KD+F+K+Y + LA+RL+ + S E E SM+ +LK
Sbjct: 392 KGANEEDVETVLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTTSDEAERSMLVKLKT 451
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKF 667
CGY+FT+KL MF D+ S D F
Sbjct: 452 ECGYQFTSKLEGMFNDLKTSHDTMQSF 478
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 104 bits (250), Expect = 2e-22
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 463 RREDLSRMYQLV----RPLGPAA--LRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIH- 515
+ EDLSRMY+L R L P A + V KD V +
Sbjct: 282 KEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQE 341
Query: 516 --FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCD 573
FV I+ LH KY E F G F AL +A N G + EL+A +CD
Sbjct: 342 QVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNK--GVSGSSSAELLATFCD 399
Query: 574 WVLRRRPAAAPLTD--VDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQE 631
+L++ + L+D ++D L + + YI DKD+F + Y + LARRL+ S + E E
Sbjct: 400 NILKKG-CSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHE 458
Query: 632 ESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDNDLTLNTG 681
S++ +LK CG +FT+K+ M TD+ V+ D KF++++ + LN G
Sbjct: 459 RSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQ-ELNPG 507
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 103 bits (247), Expect = 5e-22
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 516 FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWV 575
FV I+ LH KY + F G F AL +A N G + EL+A +CD +
Sbjct: 350 FVRKIIELHDKYVAYVTDCFQGHTLFHKALKEAFEVFCNK--GVSGSSSAELLATFCDNI 407
Query: 576 LRRRPAAAPLTD--VDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEES 633
L++ + L+D ++D L + + YI DKD+F + Y + LARRL+ S + E E S
Sbjct: 408 LKKG-GSEKLSDEAIEDTLEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERS 466
Query: 634 MINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDNDLTLNTG 681
++ +LK CG +FT+K+ M TD+ V+ D AKF++++ + LN G
Sbjct: 467 ILTKLKQQCGGQFTSKMEGMVTDLTVARDHQAKFEEFISTHS-ELNPG 513
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 100 bits (239), Expect = 4e-21
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 514 IHFVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCD 573
+ FV+ +L KY + F ++F AL+ + +N + R PE ++ Y D
Sbjct: 329 VDFVQRLLNEKDKYDSIVTTSFSNDKSFQNALNSSFEHFINLNN-----RCPEFISLYVD 383
Query: 574 WVLRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEES 633
LR+ A DV+ L +++F+Y+ +KD+F+K+Y + LA+RL+ + S + E S
Sbjct: 384 DKLRKGMKEANEEDVETVLDKVMMLFRYLQEKDLFEKYYKQHLAKRLLSGKAASDDSERS 443
Query: 634 MINRLKAACGYEFTNKLHRMFTDVAVSADLNAKF 667
M+ +LK CGY+FT+KL MF D+ S D +F
Sbjct: 444 MLVKLKTECGYQFTSKLEGMFNDLKTSHDTTQRF 477
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 91.5 bits (217), Expect = 2e-18
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 510 DEVHIHFVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEAC-----RA 564
+E V +L ++ E F +AF + ++ ++N R + R
Sbjct: 399 EEKDKELVPFLLEFKASLDRILEESFAKNEAFSNTIKESFEHLINLRQISSSPFFQQNRP 458
Query: 565 PELVARYCDWVLRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQL 624
EL+A++ D LR +++ L +V+F++I KD+F+ Y + LA+RL+
Sbjct: 459 AELIAKFLDEKLRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGK 518
Query: 625 SYSMEQEESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQ 669
S S++ E+SMI +LK CG +FTNKL MF D+ +S ++N F+Q
Sbjct: 519 SASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINESFKQ 563
Score = 38.3 bits (85), Expect = 0.020
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 229 QAIQSTVHVRSFRVRSPLALYEQLVLEPFLQAAGEQHARTAAHLLQEGDVAHYMKHV 285
+AI T+ ++ + L +Y + +PFL+ E +A LQ+ D+ Y+KHV
Sbjct: 252 EAIDRTLLSHLLKMFTALGMYSESFEKPFLECTSEFYATEGVKYLQQSDIPDYLKHV 308
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 90.2 bits (214), Expect = 5e-18
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 516 FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWV 575
FV +++ LH KY F F AL +A + N C + EL A YCD +
Sbjct: 320 FVRSVIELHDKYMAYVTNCFQSNSVFHKALKEAFEVICNK--DVVGCSSAELFAAYCDSI 377
Query: 576 LRRRPAAAPLTD--VDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEES 633
L+R + L+D +D+ L + + Y+ DKD+F + + + L RRL+ + + E E
Sbjct: 378 LKRG-GSEKLSDEAIDESLEKVVKLLTYLSDKDLFVEFHRKKLGRRLLFDKNTNDEHERI 436
Query: 634 MINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDN 674
++++LK G +FT+K+ M D+ ++ + + F++Y+ +N
Sbjct: 437 LLSKLKQFFGGQFTSKMEGMLKDITLAKEHQSSFEEYVSNN 477
>05_03_0553 - 15389376-15389499,15391167-15391576
Length = 177
Score = 29.9 bits (64), Expect = 7.1
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 238 RSFRVRSPLALYEQLVLEPFLQAAGEQHARTAAHLLQ 274
R ++++SPL L +Q VL P+ + +Q+ TA+ LLQ
Sbjct: 29 RQYQLQSPLLLQQQ-VLSPYNEFVRQQYGITASPLLQ 64
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 29.5 bits (63), Expect = 9.4
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 93 TRNFLEEHVASLLERVRGSTTLEQSDHN-DGLLDRYVSA 130
+RNF+E+ + LE++RG L+ S +N G + R++ +
Sbjct: 690 SRNFIEDTIPPSLEQLRGLLVLDLSQNNLSGTIPRFLGS 728
>01_06_1821 +
40126389-40126508,40126589-40126646,40126782-40126837,
40127076-40127176,40127336-40127405,40127501-40127570,
40127970-40128026,40128110-40128177,40128258-40128338,
40128474-40128551,40128644-40128799,40128874-40128933,
40129253-40129317,40130002-40130059
Length = 365
Score = 29.5 bits (63), Expect = 9.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 584 PLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINR 637
P+TD KL + + F +IF + RA + L Y M++E++M+ R
Sbjct: 227 PITDKHAKLPSTLACFSNFLLGEIFSQDPLRASDKALTSSGPYMMKEEDAMVYR 280
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,749
Number of Sequences: 37544
Number of extensions: 603384
Number of successful extensions: 1238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 16
length of query: 691
length of database: 14,793,348
effective HSP length: 87
effective length of query: 604
effective length of database: 11,527,020
effective search space: 6962320080
effective search space used: 6962320080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -