Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002161-TA|BGIBMGA002161-PA|IPR001373|Cullin
(691 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 155 1e-37
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 155 1e-37
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 155 1e-37
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 155 1e-37
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 153 5e-37
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 128 1e-29
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 128 1e-29
Z70783-1|CAA94852.1| 741|Caenorhabditis elegans Hypothetical pr... 97 5e-20
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 89 1e-17
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 89 1e-17
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 89 1e-17
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 75 1e-13
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 75 1e-13
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 33 0.51
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 33 0.51
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 4.8
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 4.8
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr... 30 6.3
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh... 30 6.3
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p... 30 6.3
Z49966-7|CAD57696.1| 125|Caenorhabditis elegans Hypothetical pr... 29 8.3
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 155 bits (376), Expect = 1e-37
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+ +DL MY+L++P+ A L +V + V FVE +L
Sbjct: 305 EENKDLRNMYRLLKPI-QAGLSVMVKEFEEYVKKKGLEAVSRLTG---ENVPQQFVENVL 360
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-GEEACRAPELVARYCDWVLRRRP 580
++ K++ + VF F LDKA VVNS+ G+ +A E +ARY D +L++
Sbjct: 361 RVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKEPGQSVPKASERLARYTDGLLKKST 420
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
TD++ KL +AIV+F+YI+DKDIFQK Y++ LA RLI S SM+ EE MIN+LK
Sbjct: 421 KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQ 480
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
ACGYEFT+KL RMFTD+ +S +L+ F +++ D
Sbjct: 481 ACGYEFTSKLSRMFTDIGLSQELSNNFDKHIAD 513
Score = 78.2 bits (184), Expect = 2e-14
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 44 KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRLYDETRNFLEEHVAS 103
K+ V R + ++ L+ + + W+ +FSDVY +CV+ P PL++RLY+E + ++EHV
Sbjct: 13 KVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHV-- 70
Query: 104 LLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEI 163
R + ++ D LL Y WR + +G Q VK+++ +D +
Sbjct: 71 ---RQKRQDIVDVDP--DLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDN 125
Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWERVLVRPLSAALTARIVSAL 211
+A + P+ E+G L L+IW+ LV+ + L ++ A+
Sbjct: 126 FAQYAAFLQIPDVK----EIGCLALEIWKEDLVKTILPQLVKLLLIAI 169
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 155 bits (376), Expect = 1e-37
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+ +DL MY+L++P+ A L +V + V FVE +L
Sbjct: 322 EENKDLRNMYRLLKPI-QAGLSVMVKEFEEYVKKKGLEAVSRLTG---ENVPQQFVENVL 377
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-GEEACRAPELVARYCDWVLRRRP 580
++ K++ + VF F LDKA VVNS+ G+ +A E +ARY D +L++
Sbjct: 378 RVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKEPGQSVPKASERLARYTDGLLKKST 437
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
TD++ KL +AIV+F+YI+DKDIFQK Y++ LA RLI S SM+ EE MIN+LK
Sbjct: 438 KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQ 497
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
ACGYEFT+KL RMFTD+ +S +L+ F +++ D
Sbjct: 498 ACGYEFTSKLSRMFTDIGLSQELSNNFDKHIAD 530
Score = 78.2 bits (184), Expect = 2e-14
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 44 KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRLYDETRNFLEEHVAS 103
K+ V R + ++ L+ + + W+ +FSDVY +CV+ P PL++RLY+E + ++EHV
Sbjct: 30 KVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHV-- 87
Query: 104 LLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEI 163
R + ++ D LL Y WR + +G Q VK+++ +D +
Sbjct: 88 ---RQKRQDIVDVDP--DLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDN 142
Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWERVLVRPLSAALTARIVSAL 211
+A + P+ E+G L L+IW+ LV+ + L ++ A+
Sbjct: 143 FAQYAAFLQIPDVK----EIGCLALEIWKEDLVKTILPQLVKLLLIAI 186
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 155 bits (376), Expect = 1e-37
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+ +DL MY+L++P+ A L +V + V FVE +L
Sbjct: 305 EENKDLRNMYRLLKPI-QAGLSVMVKEFEEYVKKKGLEAVSRLTG---ENVPQQFVENVL 360
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-GEEACRAPELVARYCDWVLRRRP 580
++ K++ + VF F LDKA VVNS+ G+ +A E +ARY D +L++
Sbjct: 361 RVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKEPGQSVPKASERLARYTDGLLKKST 420
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
TD++ KL +AIV+F+YI+DKDIFQK Y++ LA RLI S SM+ EE MIN+LK
Sbjct: 421 KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQ 480
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
ACGYEFT+KL RMFTD+ +S +L+ F +++ D
Sbjct: 481 ACGYEFTSKLSRMFTDIGLSQELSNNFDKHIAD 513
Score = 78.2 bits (184), Expect = 2e-14
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 44 KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRLYDETRNFLEEHVAS 103
K+ V R + ++ L+ + + W+ +FSDVY +CV+ P PL++RLY+E + ++EHV
Sbjct: 13 KVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHV-- 70
Query: 104 LLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEI 163
R + ++ D LL Y WR + +G Q VK+++ +D +
Sbjct: 71 ---RQKRQDIVDVDP--DLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDN 125
Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWERVLVRPLSAALTARIVSAL 211
+A + P+ E+G L L+IW+ LV+ + L ++ A+
Sbjct: 126 FAQYAAFLQIPDVK----EIGCLALEIWKEDLVKTILPQLVKLLLIAI 169
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 155 bits (376), Expect = 1e-37
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 5/213 (2%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+ +DL MY+L++P+ A L +V + V FVE +L
Sbjct: 381 EENKDLRNMYRLLKPI-QAGLSVMVKEFEEYVKKKGLEAVSRLTG---ENVPQQFVENVL 436
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-GEEACRAPELVARYCDWVLRRRP 580
++ K++ + VF F LDKA VVNS+ G+ +A E +ARY D +L++
Sbjct: 437 RVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKEPGQSVPKASERLARYTDGLLKKST 496
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
TD++ KL +AIV+F+YI+DKDIFQK Y++ LA RLI S SM+ EE MIN+LK
Sbjct: 497 KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQ 556
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
ACGYEFT+KL RMFTD+ +S +L+ F +++ D
Sbjct: 557 ACGYEFTSKLSRMFTDIGLSQELSNNFDKHIAD 589
Score = 78.2 bits (184), Expect = 2e-14
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 44 KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRLYDETRNFLEEHVAS 103
K+ V R + ++ L+ + + W+ +FSDVY +CV+ P PL++RLY+E + ++EHV
Sbjct: 89 KVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLSERLYNEVKACIQEHV-- 146
Query: 104 LLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEI 163
R + ++ D LL Y WR + +G Q VK+++ +D +
Sbjct: 147 ---RQKRQDIVDVDP--DLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDN 201
Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWERVLVRPLSAALTARIVSAL 211
+A + P+ E+G L L+IW+ LV+ + L ++ A+
Sbjct: 202 FAQYAAFLQIPDVK----EIGCLALEIWKEDLVKTILPQLVKLLLIAI 245
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 153 bits (370), Expect = 5e-37
Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 5/213 (2%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+ +DL MY+L++P+ A L +V + V FVE +L
Sbjct: 305 EENKDLRNMYRLLKPI-QAGLSVMVKEFEEYVKKKGLEAVSRLTG---ENVPQQFVENVL 360
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-GEEACRAPELVARYCDWVLRRRP 580
++ K++ + VF F LDKA VVNS+ G+ E +ARY D +L++
Sbjct: 361 RVYNKFNDMKTAVFMDDGEFSSGLDKALQGVVNSKEPGQSVPNGSERLARYTDGLLKKST 420
Query: 581 AAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKA 640
TD++ KL +AIV+F+YI+DKDIFQK Y++ LA RLI S SM+ EE MIN+LK
Sbjct: 421 KGLSETDLEAKLDSAIVIFRYIEDKDIFQKFYSKMLANRLIASTSISMDAEELMINKLKQ 480
Query: 641 ACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
ACGYEFT+KL RMFTD+ +S +L+ F +++ D
Sbjct: 481 ACGYEFTSKLSRMFTDIGLSQELSNNFDKHIAD 513
Score = 77.4 bits (182), Expect = 3e-14
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 44 KLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVYALCVAHPEPLADRLYDETRNFLEEHVAS 103
K+ V R + ++ L+ + + W+ +FSDVY +CV+ P PL +RLY+E + ++EHV
Sbjct: 13 KVWVQLRPSIIDIINLRPITNVQWHHKFSDVYDICVSIPTPLIERLYNEVKACIQEHV-- 70
Query: 104 LLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEI 163
R + ++ D LL Y WR + +G Q VK+++ +D +
Sbjct: 71 ---RQKRQDIVDVDP--DLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDN 125
Query: 164 IYGTSATVSCPEQDARQLEVGELGLDIWERVLVRPLSAALTARIVSAL 211
+A + P+ E+G L L+IW+ LV+ + L ++ A+
Sbjct: 126 FAQYAAFLQIPDVK----EIGCLALEIWKEDLVKTILPQLVKLLLIAI 169
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 128 bits (309), Expect = 1e-29
Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 9/219 (4%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+R +DLSRM++L + P L L + + +V+ +L
Sbjct: 315 KRDDDLSRMFKLCDRV-PNGLDELRKSLENHIAKEGHQALERVAMEAATDAKL-YVKTLL 372
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNS-----RSGEEA--CRAPELVARYCDW 574
+H +Y L N F FM +LDKA ++ +N+ R+ +A ++ EL+ARYCD
Sbjct: 373 EVHERYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQ 432
Query: 575 VLRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESM 634
+LR+ ++++ T +VVFKYIDDKD+F K Y + ++RLI +LS S E E +
Sbjct: 433 LLRKSSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANF 492
Query: 635 INRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
I +LK+ CGYE+T +L +M D VS DL A F++ D
Sbjct: 493 ITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEKKAD 531
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 128 bits (309), Expect = 1e-29
Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 9/219 (4%)
Query: 462 QRREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAIL 521
+R +DLSRM++L + P L L + + +V+ +L
Sbjct: 315 KRDDDLSRMFKLCDRV-PNGLDELRKSLENHIAKEGHQALERVAMEAATDAKL-YVKTLL 372
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNS-----RSGEEA--CRAPELVARYCDW 574
+H +Y L N F FM +LDKA ++ +N+ R+ +A ++ EL+ARYCD
Sbjct: 373 EVHERYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQ 432
Query: 575 VLRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESM 634
+LR+ ++++ T +VVFKYIDDKD+F K Y + ++RLI +LS S E E +
Sbjct: 433 LLRKSSKMPDEAELEELQTKIMVVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANF 492
Query: 635 INRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRD 673
I +LK+ CGYE+T +L +M D VS DL A F++ D
Sbjct: 493 ITKLKSMCGYEYTARLSKMVNDTQVSKDLTADFKEKKAD 531
>Z70783-1|CAA94852.1| 741|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 741
Score = 96.7 bits (230), Expect = 5e-20
Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 18/173 (10%)
Query: 516 FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNS-------------RSGEEAC 562
+V+ +L + K+S L E F + A DKA AVVN R+
Sbjct: 323 YVQQLLLMFDKFSSLVREGFCDDARLLTARDKAFRAVVNDSSIFKTEMMNKKGRTLSVES 382
Query: 563 RAPELVARYCDWVLRRRPAAAPLT--DVDDKLTAAIVVFKYIDDKDIFQKHYARALARRL 620
+ EL+A YCD +LR+ + LT ++D+KL ++V KY+++KD+F + + L+RRL
Sbjct: 383 KCAELLANYCDLLLRKTQLSKKLTSEEIDEKLNQVLLVLKYVENKDVFMRFHRAHLSRRL 442
Query: 621 IHQLSYSMEQEESMINRLKAACGY--EFTNKLHRMFTDVAVSADLNAKFQQYL 671
I ++S E+EE M+ +L+ CG + NKL RM D+ ++ D+N+ F++ L
Sbjct: 443 ILEMSADQEKEEMMVTKLR-ECGMPSDAVNKLSRMLQDIELNKDMNSSFKKAL 494
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 89.0 bits (211), Expect = 1e-17
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 516 FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRS-------GEEACRAPELV 568
++ +L +H Y L N+ F FM +LDKA + + + + R+ + +
Sbjct: 323 YITKLLEVHEIYFNLINKAFDRNALFMQSLDKASKDFIEANAVTMLAPEKHRSTRSADYL 382
Query: 569 ARYCDWVLRRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSM 628
ARYCD +L++ T +D LT V KYI +KD+FQ +Y + R+I+ S S
Sbjct: 383 ARYCDQLLKKNSKVQDETALDKALT----VLKYISEKDVFQLYYQNWFSERIINNSSASD 438
Query: 629 EQEESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDNDLTLN 679
+ EE I L A G E+T L +M D +S DL +F+ + + N
Sbjct: 439 DAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEFKDIKTEKSIDFN 489
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 88.6 bits (210), Expect = 1e-17
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 8/209 (3%)
Query: 465 EDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEV---HIHFVEAIL 521
EDL+R++++ + +G + P +++ ++FV +L
Sbjct: 293 EDLTRIFRIFKRIGDSVTVPGGGLKALLKAVSEYLNETGSNIVKNEDLLKNPVNFVNELL 352
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPA 581
L +S L F + F +NS ++PE VA Y D +LR
Sbjct: 353 QLKDYFSSLLTTAFADDRDFKNRFQHDFETFLNSNR-----QSPEFVALYMDDMLRSGLK 407
Query: 582 AAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAA 641
++D+KL +++F+Y+ +KD+F+K++ + LA+RL+ S S + E++++ +LK
Sbjct: 408 CVSDAEMDNKLDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTE 467
Query: 642 CGYEFTNKLHRMFTDVAVSADLNAKFQQY 670
CG +FT KL MF D + L F+ +
Sbjct: 468 CGCQFTQKLENMFRDKELWLTLATSFRDW 496
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 88.6 bits (210), Expect = 1e-17
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 8/209 (3%)
Query: 465 EDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEV---HIHFVEAIL 521
EDL+R++++ + +G + P +++ ++FV +L
Sbjct: 293 EDLTRIFRIFKRIGDSVTVPGGGLKALLKAVSEYLNETGSNIVKNEDLLKNPVNFVNELL 352
Query: 522 TLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPA 581
L +S L F + F +NS ++PE VA Y D +LR
Sbjct: 353 QLKDYFSSLLTTAFADDRDFKNRFQHDFETFLNSNR-----QSPEFVALYMDDMLRSGLK 407
Query: 582 AAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAA 641
++D+KL +++F+Y+ +KD+F+K++ + LA+RL+ S S + E++++ +LK
Sbjct: 408 CVSDAEMDNKLDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTE 467
Query: 642 CGYEFTNKLHRMFTDVAVSADLNAKFQQY 670
CG +FT KL MF D + L F+ +
Sbjct: 468 CGCQFTQKLENMFRDKELWLTLATSFRDW 496
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 75.4 bits (177), Expect = 1e-13
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 563 RAPELVARYCDWVLRR-RPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLI 621
R+ EL++++ +L + T +D + AIV+F+Y+ KD+F+ +Y R LA+RL
Sbjct: 437 RSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLF 496
Query: 622 HQLSYSMEQEESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYL 671
+ S S++ E+ ++ +LK CG FT KL MF D+ S + F QYL
Sbjct: 497 LERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYL 546
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 75.4 bits (177), Expect = 1e-13
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 563 RAPELVARYCDWVLRR-RPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLI 621
R+ EL++++ +L + T +D + AIV+F+Y+ KD+F+ +Y R LA+RL
Sbjct: 474 RSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLF 533
Query: 622 HQLSYSMEQEESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYL 671
+ S S++ E+ ++ +LK CG FT KL MF D+ S + F QYL
Sbjct: 534 LERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYL 583
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 33.5 bits (73), Expect = 0.51
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 289 TATSTTSPIILQAAQYSTMVVQYHTVAVQCSRVQWSTVGVQYSTVGVQYSTVQYSGCAVE 348
+ T+TT+PI + +T + T + S +T +T +S C+ +
Sbjct: 482 STTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTS-QCASWSACSAQ 540
Query: 349 YSGCAVQYSGCAVQYSTV 366
GC Q C TV
Sbjct: 541 CGGCGTQSRRCGTYVETV 558
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 33.5 bits (73), Expect = 0.51
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 289 TATSTTSPIILQAAQYSTMVVQYHTVAVQCSRVQWSTVGVQYSTVGVQYSTVQYSGCAVE 348
+ T+TT+PI + +T + T + S +T +T +S C+ +
Sbjct: 482 STTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTTQAPPTTTTSTS-QCASWSACSAQ 540
Query: 349 YSGCAVQYSGCAVQYSTV 366
GC Q C TV
Sbjct: 541 CGGCGTQSRRCGTYVETV 558
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 30.3 bits (65), Expect = 4.8
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 319 SRVQWSTVGVQYSTVGVQYSTVQ--YSGCAVEYSGCAVQY-SGCAVQYSTVQYSGCAVQH 375
S ++S YS YS YS + YS + Y SG S+ +YS + +
Sbjct: 1671 SSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730
Query: 376 SGCAVQYSTVGVQYSTVGVQY 396
S + YS QYS QY
Sbjct: 1731 SPTSPSYSPTSPQYSPTSPQY 1751
Score = 29.5 bits (63), Expect = 8.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 337 YSTVQYSGCAVEYSGCAVQYSGCAVQYSTVQ--YSGCAVQHSGCAVQYSTVGVQYSTVGV 394
+S+ QYS + YS + Y+ + QYS Y+ + G + QYS YS
Sbjct: 1773 FSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP 1832
Query: 395 QY 396
Y
Sbjct: 1833 TY 1834
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 30.3 bits (65), Expect = 4.8
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 319 SRVQWSTVGVQYSTVGVQYSTVQ--YSGCAVEYSGCAVQY-SGCAVQYSTVQYSGCAVQH 375
S ++S YS YS YS + YS + Y SG S+ +YS + +
Sbjct: 1678 SSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1737
Query: 376 SGCAVQYSTVGVQYSTVGVQY 396
S + YS QYS QY
Sbjct: 1738 SPTSPSYSPTSPQYSPTSPQY 1758
Score = 29.5 bits (63), Expect = 8.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 337 YSTVQYSGCAVEYSGCAVQYSGCAVQYSTVQ--YSGCAVQHSGCAVQYSTVGVQYSTVGV 394
+S+ QYS + YS + Y+ + QYS Y+ + G + QYS YS
Sbjct: 1780 FSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP 1839
Query: 395 QY 396
Y
Sbjct: 1840 TY 1841
>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
protein F19H8.1 protein.
Length = 1229
Score = 29.9 bits (64), Expect = 6.3
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 105 LERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEII 164
+ VR T E D R A + Q V +KR+K D EI
Sbjct: 206 IHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAPPVS----LKREKTGDWEIK 261
Query: 165 YGTSATVSCPE----QDARQLEVGELGLDIWERVLVRPLSAA 202
G+ V+C + +D L + LG++I ++ RP S A
Sbjct: 262 QGSGGLVACVDPVMSKDHENLWLANLGMNINDKKQKRPGSVA 303
>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1229
Score = 29.9 bits (64), Expect = 6.3
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 105 LERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEII 164
+ VR T E D R A + Q V +KR+K D EI
Sbjct: 206 IHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAPPVS----LKREKTGDWEIK 261
Query: 165 YGTSATVSCPE----QDARQLEVGELGLDIWERVLVRPLSAA 202
G+ V+C + +D L + LG++I ++ RP S A
Sbjct: 262 QGSGGLVACVDPVMSKDHENLWLANLGMNINDKKQKRPGSVA 303
>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1230
Score = 29.9 bits (64), Expect = 6.3
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 105 LERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGVAXXXXXXXXXXXQHVKRQKVSDAEII 164
+ VR T E D R A + Q V +KR+K D EI
Sbjct: 206 IHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAPPVS----LKREKTGDWEIK 261
Query: 165 YGTSATVSCPE----QDARQLEVGELGLDIWERVLVRPLSAA 202
G+ V+C + +D L + LG++I ++ RP S A
Sbjct: 262 QGSGGLVACVDPVMSKDHENLWLANLGMNINDKKQKRPGSVA 303
>Z49966-7|CAD57696.1| 125|Caenorhabditis elegans Hypothetical
protein F35C11.7 protein.
Length = 125
Score = 29.5 bits (63), Expect = 8.3
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 306 TMVVQYHTVAVQCSRVQWSTVGVQYSTVGVQYSTVQYSGCAVEYSGCAVQYSGCAVQYST 365
T + + HT +Q T Q ST + + +S ++S C+ + C VQ T
Sbjct: 13 TSIHKVHTQTANIIEIQIPTNAPQSSTSCSTATWLVWS----DWSTCSDECGSCGVQMRT 68
Query: 366 VQYSGCAVQHSGCAVQYSTVGVQYSTVGV 394
C S C S+ GVQY + +
Sbjct: 69 ---RTCLTTDSTCTCSGSSTGVQYCNLDI 94
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,815
Number of Sequences: 27539
Number of extensions: 505405
Number of successful extensions: 1095
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1027
Number of HSP's gapped (non-prelim): 51
length of query: 691
length of database: 12,573,161
effective HSP length: 86
effective length of query: 605
effective length of database: 10,204,807
effective search space: 6173908235
effective search space used: 6173908235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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