Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002161-TA|BGIBMGA002161-PA|IPR001373|Cullin
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 107 2e-23
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 102 7e-22
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 92 1e-18
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 91 2e-18
At1g02980.1 68414.m00268 cullin family protein similar to cullin... 79 1e-14
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi... 34 0.36
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 30 5.9
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE... 29 7.8
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)... 29 7.8
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 107 bits (257), Expect = 2e-23
Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 9/198 (4%)
Query: 465 EDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAILTLH 524
EDL RMY L R + LV K + + FV+ +L
Sbjct: 285 EDLGRMYNLFRRV----TNGLVTVRDVMTSHLREMGKQLVTDPEKSKDPVEFVQRLLDER 340
Query: 525 GKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPAAAP 584
KY K+ N FG + F AL+ + +N + R+PE ++ + D LR+
Sbjct: 341 DKYDKIINTAFGNDKTFQNALNSSFEYFINLNA-----RSPEFISLFVDDKLRKGLKGIT 395
Query: 585 LTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAACGY 644
DV+ L +++F+Y+ +KD+F+K+Y + LA+RL+ + S + E S+I +LK CGY
Sbjct: 396 DVDVEVILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGY 455
Query: 645 EFTNKLHRMFTDVAVSAD 662
+FT+KL MFTD+ S D
Sbjct: 456 QFTSKLEGMFTDMKTSED 473
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 102 bits (245), Expect = 7e-22
Identities = 61/198 (30%), Positives = 98/198 (49%), Gaps = 9/198 (4%)
Query: 465 EDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVEAILTLH 524
ED+ RMY L R + LV K + + FV+ +L
Sbjct: 285 EDMGRMYSLFRRVANG----LVTVRDVMTLHLREMGKQLVTDPEKSKDPVEFVQRLLDER 340
Query: 525 GKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRRRPAAAP 584
KY ++ N F + F AL+ + VN + R+PE ++ + D LR+
Sbjct: 341 DKYDRIINMAFNNDKTFQNALNSSFEYFVNLNT-----RSPEFISLFVDDKLRKGLKGVG 395
Query: 585 LTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMINRLKAACGY 644
DVD L +++F+Y+ +KD+F+K+Y + LA+RL+ + S + E ++I +LK CGY
Sbjct: 396 EEDVDLILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERNLIVKLKTECGY 455
Query: 645 EFTNKLHRMFTDVAVSAD 662
+FT+KL MFTD+ S D
Sbjct: 456 QFTSKLEGMFTDMKTSHD 473
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 92.3 bits (219), Expect = 1e-18
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 517 VEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVL 576
V+++L ++ E F ++F + + ++N R A EL+A++ D L
Sbjct: 394 VQSLLDFKASLDIIWEESFYKNESFGNTIKDSFEHLINLRQNRPA----ELIAKFLDEKL 449
Query: 577 RRRPAAAPLTDVDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMIN 636
R +++ L +V+F++I KD+F+ Y + LA+RL+ S S++ E+SMI+
Sbjct: 450 RAGNKGTSEEELESVLEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMIS 509
Query: 637 RLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQ 669
+LK CG +FTNKL MF D+ +S ++N F+Q
Sbjct: 510 KLKTECGSQFTNKLEGMFKDIELSKEINESFKQ 542
Score = 37.1 bits (82), Expect = 0.039
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 227 IRQAIQSTVHVRSFRVRSPLALYEQLVLEPFLQAAGEQHARTAAHLLQEGDVAHYMKHV 285
+ +A+ T+ ++ + L +Y + +PFL+ E +A +Q+ DV Y+KHV
Sbjct: 238 LAEAVNRTLLSHLLKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSDVPEYLKHV 296
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 91.5 bits (217), Expect = 2e-18
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 11/218 (5%)
Query: 465 EDLSRMYQL----VRPLGPAA--LRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIHFVE 518
+DLSRMY+L +R L P A + V +
Sbjct: 281 DDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIR 340
Query: 519 AILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCDWVLRR 578
++ LH KY E F F AL +A N + + EL+A +CD +L++
Sbjct: 341 KVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSS--SAELLATFCDNILKK 398
Query: 579 RPAAAPLTD--VDDKLTAAIVVFKYIDDKDIFQKHYARALARRLIHQLSYSMEQEESMIN 636
+ L+D ++D L + + YI DKD+F + Y + LARRL+ S + + E S++
Sbjct: 399 G-GSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILT 457
Query: 637 RLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDN 674
+LK CG +FT+K+ M TD+ ++ + F+ YL N
Sbjct: 458 KLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSN 495
>At1g02980.1 68414.m00268 cullin family protein similar to cullin 1
[Homo sapiens] GI:3139077; contains Pfam profile
PF00888: Cullin family
Length = 742
Score = 79.0 bits (186), Expect = 1e-14
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 14/223 (6%)
Query: 463 RREDLSRMYQLVRPLGPAALRPLVDXXXXXXXXXXXXXXXXXXXXXKDEVHIH------- 515
+ +DL+RMY+L P+ P L P+ D D+
Sbjct: 280 KMDDLARMYRLYHPI-PQGLDPVADLFKQHITVEGSALIKQATEAATDKAASTSGLKVQD 338
Query: 516 --FVEAILTLHGKYSKLFNEVFGGAQAFMGALDKACSAVVNSRSGEEACRAPELVARYCD 573
+ ++ LH K+ +E F F AL +A N + E++A YCD
Sbjct: 339 QVLIRQLIDLHDKFMVYVDECFQKHSLFHKALKEAFEVFCNKTVA--GVSSAEILATYCD 396
Query: 574 WVLRRRPAAAPLTDVDDKLTAAIVV--FKYIDDKDIFQKHYARALARRLIHQLSYSMEQE 631
+L+ L + D +LT VV YI DKD+F + + + ARRL+ + + E
Sbjct: 397 NILKTGGGIEKLENEDLELTLEKVVKLLVYISDKDLFAEFFRKKQARRLLFDRNGNDYHE 456
Query: 632 ESMINRLKAACGYEFTNKLHRMFTDVAVSADLNAKFQQYLRDN 674
S++ + K G +FT+K+ M TD+ ++ + F ++L N
Sbjct: 457 RSLLTKFKELLGAQFTSKMEGMLTDMTLAKEHQTNFVEFLSVN 499
>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
sapiens, PID:d1034112
Length = 434
Score = 33.9 bits (74), Expect = 0.36
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 255 EPFLQAAGEQHARTAAHLLQEGDVAHYMKHV 285
+PFL + + +A A +LQ D++HY+K+V
Sbjct: 256 DPFLDSTSKFYAEEAEQVLQRSDISHYLKYV 286
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 29.9 bits (64), Expect = 5.9
Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 322 QWSTV-GVQYSTVGVQYSTVQYSGCAVEYSGCAVQYSGCAVQYSTVQYSGCAVQHSGCAV 380
QWST G Q G Q Q+ G Y G Q G Q S QY G QH G
Sbjct: 97 QWSTQHGGQIPQYGGQ--NPQHGGQRPPYGGQNPQQGG---QMS--QYGGHNPQHGGHRP 149
Query: 381 QYSTVGVQYSTVGVQYRVQQV 401
QY QY G Y+ Q V
Sbjct: 150 QYGGQRPQYGGPGNNYQNQNV 170
>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family
Length = 666
Score = 29.5 bits (63), Expect = 7.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 80 AHPEPLADRLYDETRNFLEEHVASLLERVRGSTTLEQSDHNDGLLDRYVSAWREYSQGV 138
AH ++RL+D+ NFL ++ A+ L+ R L D L + V A +YS+ +
Sbjct: 321 AHIADASERLHDKMTNFLSKNKAAQLQGKRDGAELSTRD-----LQKMVQALPQYSEQI 374
>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)
identical to Ras-related protein ARA-2 SP:P28185 from
[Arabidopsis thaliana]
Length = 216
Score = 29.5 bits (63), Expect = 7.8
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 39 LTERIKLGVDNRTQVAGVVGLKAVDRIVWNTRFSDVY-ALCVAHPEPLADRL--YDETRN 95
L + +GV+ T+ V G K V +W+T + Y A+ A+ L YD TR+
Sbjct: 40 LESKSTIGVEFATKTTKVEG-KVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRH 98
Query: 96 FLEEHVASLLERVRGST 112
E+ A L +RG T
Sbjct: 99 ATFENAARWLRELRGHT 115
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,376
Number of Sequences: 28952
Number of extensions: 467599
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 15
length of query: 691
length of database: 12,070,560
effective HSP length: 86
effective length of query: 605
effective length of database: 9,580,688
effective search space: 5796316240
effective search space used: 5796316240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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