GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   9.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   9.6  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 25  MSEEAPILPRFYAGRSVFITGGTGFMGKYTRVIC-VVSKPSLKTCNETARSVPPR 78
           ++E   +L +F + +    +  TGF  + ++++    +   ++ C ET + +PPR
Sbjct: 69  LNERPNLLNKFMSAQDGTPSKSTGFNERSSQLVSEFTTTEDIENCEETTQVLPPR 123


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 407 RYHNVPCVQLKVLVV 421
           RYH+VPCVQ  ++++
Sbjct: 93  RYHSVPCVQRSMIIL 107


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,374
Number of Sequences: 5004
Number of extensions: 71388
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 2
length of query: 458
length of database: 2,362,478
effective HSP length: 75
effective length of query: 383
effective length of database: 1,987,178
effective search space: 761089174
effective search space used: 761089174
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)