Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 90 4e-18
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 71 1e-12
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 63 5e-10
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 57 3e-08
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423... 56 8e-08
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 54 2e-07
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 54 2e-07
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 48 2e-05
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 33 0.63
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 33 0.63
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704... 32 1.1
09_06_0337 - 22396350-22396994 31 1.9
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 31 2.5
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 31 2.5
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112... 30 4.4
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 89.8 bits (213), Expect = 4e-18
Identities = 101/427 (23%), Positives = 172/427 (40%), Gaps = 28/427 (6%)
Query: 6 TSTLHE--GCVLQERGGTMADMSEEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKP 63
TS+ H+ G + + + +A + ++ +S+ ITG TGF+GK + +P
Sbjct: 389 TSSRHKPLGTISLRNSEKSNESNMDAATVAGYFKDKSILITGSTGFLGKIFVEKILRIQP 448
Query: 64 SLKTCNETARSVPPRPLPGPLCSGRSVGLCVQIFEKVRERC-----PWQLDKLRVLPGNL 118
+K R+ + + +G ++F +RE + +K+ L G++
Sbjct: 449 DVKKIFLLVRAADTSSAEQRVLN-EVIGN--ELFGPLRENYGSNFYSFMKEKISPLAGDI 505
Query: 119 ERPLLGLEPVTIARLH-QVSVVFHNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLE 177
LGLE + I +L ++ ++ + AAT F E ++ NV G + NL+
Sbjct: 506 INENLGLESLEILKLSKEIDIIVNGAATTNFYERYDVSLASNVLGAKYVCKFAKKCANLK 565
Query: 178 ALVHVSTAYSNAELSRVE-ERVYXXXXXXXXXXXXXXXXXXXXXXXXTPRYIHPK----- 231
+H+STA+ + E + E+V+ H
Sbjct: 566 MFLHISTAFVSGEQEGLLLEKVFQIGETLKEGCHLDIAAELQLVESVKAELTHSTNARQF 625
Query: 232 --PNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNG-PSXXXXX 288
PNTY FTKAM E +L R PV I RP+IV S P+PGWIE S
Sbjct: 626 GWPNTYVFTKAMGE-MLVGHFGRELPVVIIRPSIVSSIYHDPLPGWIEGTRTIDSIISAY 684
Query: 289 XXXXLMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCGSLRVYNCASGEHATRLSD 348
+ H A + D IP D+VV+ M+ VA G + ++ +S ++ S
Sbjct: 685 AKQTIPHFIGAGHVI-LDVIPGDMVVNAML-VAMAVHWSERGQVIIHVTSSQQNPLSTST 742
Query: 349 FRATAVRVLRSLPLDSGLSYPFL----IVVQNRFVYRLLEFVLQTAPLHVAECLRQ-TDG 403
R + P G + + + + N+ +R F+ PL V + G
Sbjct: 743 MLDLMYRYFTANPQTMGKNGKVVKTKRLNITNKTGFRAYMFLKYKLPLEVLHLVNPLLGG 802
Query: 404 QKARYHN 410
++Y+N
Sbjct: 803 YFSQYYN 809
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 71.3 bits (167), Expect = 1e-12
Identities = 47/116 (40%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 232 PNTYTFTKAMAECVLQER----TSRRY--PVAIFRPTIVISADRHPVPGWIENLNGPSXX 285
PNTY FTKAM E +LQE+ RR+ PV I RP+I+ S R P+PGWIE
Sbjct: 232 PNTYVFTKAMGEMMLQEQLVAGAGRRHGIPVVIARPSIITSVHRDPLPGWIEGTRTIDAI 291
Query: 286 XXXXXXXLMHVFRAKLALRADFIPVDVVVDNMIA--VAWETGSEPCGSLRVYNCAS 339
+ F A L L D +P D+VV+ M+A VA GS + VY+ S
Sbjct: 292 IIGYAKQSLSCFLADLDLIMDVVPGDLVVNAMMAAMVAHSRGSS--SEMAVYHVTS 345
Score = 56.8 bits (131), Expect = 3e-08
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 27 EEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCS 86
+EA I+ ++ +S+ ITG TGF+GK + +P ++ R+V + +
Sbjct: 2 DEARII-EYFKNKSILITGSTGFLGKILVEKILRVQPDVRKIYLPVRAVDAATAKQRMQT 60
Query: 87 GRSVGLCVQIFEKVRERCPWQL---DKLRVLPGNLERPLLGLEPVTIARLHQ-VSVVFHN 142
+G + K + +Q +K+ L ++ LGLE T+ L + ++++ +
Sbjct: 61 -EVIGKELFGLLKEQHGKGFQSFIDEKVVPLAADMMHQNLGLEESTLQELAKDLNIIVNG 119
Query: 143 AATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAELSR-VEER 197
AAT F E A+D NV G+ L + NLE +HVSTAY E S V+ER
Sbjct: 120 AATTNFYERYDVALDVNVMGVKYLCQLAKKCANLEVFLHVSTAYVCGERSGVVQER 175
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 62.9 bits (146), Expect = 5e-10
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 232 PNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXX 291
PNTY FTKAM E +L PV I RP+I+ S + P+PGW+E +
Sbjct: 234 PNTYVFTKAMGEMLLGHLRGD-LPVVIIRPSIITSILKEPLPGWMEGIRTIDSVIIGYAK 292
Query: 292 XLMHVFRAKLALRADFIPVDVVVD-NMIAVAWETGSE 327
+ F L L D IP D+VV+ M+A+A +G +
Sbjct: 293 QTLSFFLVDLNLIMDVIPGDMVVNAMMVAMAAHSGEQ 329
Score = 57.2 bits (132), Expect = 3e-08
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Query: 35 FYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCSGRSVGLCV 94
F+ GRS+ ITG TGF+GK + +P +K R+ + G
Sbjct: 9 FFRGRSILITGSTGFLGKVLVEKILRVQPDVKKLYLLVRANDVESATRRV-QDEVTGK-- 65
Query: 95 QIFEKVRERC-----PWQLDKLRVLPGNLERPLLGLEPVTIARL-HQVSVVFHNAATLKF 148
+IF+ ++E+ + +K+ L G++ LGL+ + L +++ ++ + AAT F
Sbjct: 66 EIFQVLKEKHGDGFESFVEEKVCTLAGDIIYENLGLDSAKLTELSNEIDIIVNGAATTNF 125
Query: 149 DEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAE 190
E A D NV G ++ + L+ L+HVSTAY E
Sbjct: 126 YERYDVAFDSNVLGAKNICEFAKKCTKLKMLLHVSTAYVAGE 167
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 56.8 bits (131), Expect = 3e-08
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 22 MADMSEEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLP 81
MA +A + ++ G+S+ ITG TGF+GK + +P +K R++
Sbjct: 1 MASDRLDAERIIEYFKGKSILITGATGFLGKILVEKILRVQPDVKKIYLLVRAIDQASAN 60
Query: 82 GPLCSGRSVGLCVQIFEKVRER-----CPWQLDKLRVLPGNLERPLLGLEPVTIARL-HQ 135
+ S + ++F V+E+ + +K+ L G++ LGL+P + L
Sbjct: 61 QRVQSEVTE---TELFSVVKEKHGKGFSRFIEEKVVALAGDIIYDDLGLDPPLLQHLADN 117
Query: 136 VSVVFHNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAEL-SRV 194
+ V+ + AAT F ++D NV G+ L + L+ +HVSTAY+ E +
Sbjct: 118 LDVIVNGAATTNFYGRYDVSLDVNVLGVKHLCQLAKKCRGLKVFLHVSTAYAGGEQEGLI 177
Query: 195 EERVY 199
+ER +
Sbjct: 178 QERAF 182
Score = 54.4 bits (125), Expect = 2e-07
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 233 NTYTFTKAMAECVLQE---RTSRRYP-------VAIFRPTIVISADRHPVPGWIENLNGP 282
NTY FTKAM E VL ++S P V + RP+I+ S R PVPGW++
Sbjct: 237 NTYVFTKAMGEMVLSRMLLQSSSPAPAITGAGGVVVVRPSIITSIQRDPVPGWMQGTRTI 296
Query: 283 SXXXXXXXXXLMHVFRAKLALRADFIPVDVVVDNMIAVA 321
+ F L L D IP D+VV+ M+A A
Sbjct: 297 DTLIIGYAKQNLSCFLGDLDLVMDVIPGDMVVNAMMAAA 335
>04_03_0542 +
16940464-16940527,16941906-16942101,16942204-16942365,
16942721-16942802,16942873-16943139,16943285-16943416
Length = 300
Score = 55.6 bits (128), Expect = 8e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 232 PNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXX 291
PNTY TKAM E +L++ PV I RP+I+ S + P+PGWIE
Sbjct: 94 PNTYVLTKAMGEMLLRQ-LGGDLPVVIVRPSIITSTFQDPMPGWIEETRTIDAIFVAYND 152
Query: 292 XLMHVFRAKLALRADFIPVDVVVDNMIA 319
+ F ++ D IP D+V+ M+A
Sbjct: 153 QTLPCFIFDGSVIFDLIPGDMVISAMMA 180
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 54.4 bits (125), Expect = 2e-07
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 27 EEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCS 86
E I RF +++ ITG TGF+GK + +P ++ R+ P
Sbjct: 2 ETGGIAERF-RDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRA-PDAIAAEERVL 59
Query: 87 GRSVGLCVQIFEKVRERC-----PWQLDKLRVLPGNLERPLLGLEPVTIARLHQ-VSVVF 140
VG +F+ +RE+ + +K+ LPG++ GLE + +L Q V ++
Sbjct: 60 TEVVGK--GLFDVLREQYGAGFNSFIKEKIYALPGDVMHENFGLESYEVLQLSQKVDIIV 117
Query: 141 HNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAE 190
+ AAT F E A+ N G++ L NL+ ++HVSTAY E
Sbjct: 118 NGAATTNFMERYDVALATNAAGVMHLCQFAKQCDNLKMVLHVSTAYVAGE 167
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 54.4 bits (125), Expect = 2e-07
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 10/170 (5%)
Query: 27 EEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCS 86
E I RF +++ ITG TGF+GK + +P ++ R+ P
Sbjct: 2 ETGGIAERF-RDKTILITGATGFLGKLLVEKILRVQPEVRKLYLLVRA-PDAIAAEERVL 59
Query: 87 GRSVGLCVQIFEKVRERC-----PWQLDKLRVLPGNLERPLLGLEPVTIARLHQ-VSVVF 140
VG +F+ +RE+ + +K+ LPG++ GLE I +L Q V ++
Sbjct: 60 TEVVGN--GLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYDILQLSQKVDIIV 117
Query: 141 HNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAE 190
+ AAT F E A+ N G++ L NL+ ++HVSTAY E
Sbjct: 118 NGAATTNFMERYDVALATNTTGVVHLCQFAKQCDNLKMVLHVSTAYVAGE 167
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 47.6 bits (108), Expect = 2e-05
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 80 LPGPLCSGRSVGLCVQIFEKVRER-----CPWQLDKLRVLPGNLERPLLGLEPVTIAR-- 132
L G L S + + + IF+ +RE+ W DK+ L G++ G+ +A
Sbjct: 76 LSGVLSSVVAAIMQLPIFQPLREKYQTHFSSWFWDKVFPLAGDVSLKNFGIGDARLAEDI 135
Query: 133 LHQVSVVFHNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSN 188
+ +++ H AAT+ F E A+ N G+ ++D NLE ++ VSTAY N
Sbjct: 136 RKETNIIVHMAATVNFAERYDTALAINTMGVKHMIDFASKCTNLELVLLVSTAYVN 191
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 32.7 bits (71), Expect = 0.63
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + SRR P+ RPTI+ AD HP PG
Sbjct: 664 VLVDAVSRRIPLVTDRPTIIFGADVTHPHPG 694
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 32.7 bits (71), Expect = 0.63
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + SRR P+ RPTI+ AD HP PG
Sbjct: 653 VLVDAVSRRIPLVTDRPTIIFGADVTHPHPG 683
>01_06_0878 -
32669790-32669846,32670206-32670299,32670384-32670499,
32670786-32671096,32672243-32672364,32672754-32672870,
32672982-32673054,32673416-32673542,32673659-32673727,
32673811-32674170,32674493-32674633
Length = 528
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 99 KVRERCPWQLDKLRVLPGNLER---PLLGLEPVTIARLHQVSVVFHNAATLKFDEALRKA 155
++ RCP QL + +V + ++ PL LEP T+ L+++ + HN+A + + +
Sbjct: 332 RILSRCPEQLKQKQVNSDSSDKKDSPLQTLEPSTLQALYELISLVHNSAEMVSQNEITEP 391
Query: 156 VDQN 159
Q+
Sbjct: 392 TSQD 395
>09_06_0337 - 22396350-22396994
Length = 214
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 230 PKPNTYTFTKA-MAECVLQERTSRRYPVAIFRPTIVISADRHP 271
P+PN++T TKA MAE S Y +F P+ V HP
Sbjct: 65 PEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHP 107
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + +RR P+ RPTI+ AD HP PG
Sbjct: 871 VLVDALTRRIPLVSDRPTIIFGADVTHPHPG 901
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + +RR P+ RPTI+ AD HP PG
Sbjct: 754 VLVDALTRRIPLVSDRPTIIFGADVTHPHPG 784
>02_01_0162 -
1126273-1126593,1126950-1127117,1127211-1127501,
1127688-1127763,1127841-1127886,1128006-1128072,
1128162-1128234,1128321-1128561,1128669-1128822,
1128915-1129042,1129481-1129535,1129629-1129838
Length = 609
Score = 29.9 bits (64), Expect = 4.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 225 PRYIHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGP 282
P+Y HP+P+ A A + +SR + V+ RP V+ A P P +E P
Sbjct: 542 PQYHHPRPDA----AAAAVSAAWQHSSRLHDVSSLRPVAVLPAPPPPPPPQMELFCSP 595
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.139 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,508,329
Number of Sequences: 37544
Number of extensions: 509955
Number of successful extensions: 1429
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 27
length of query: 458
length of database: 14,793,348
effective HSP length: 84
effective length of query: 374
effective length of database: 11,639,652
effective search space: 4353229848
effective search space used: 4353229848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)
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