GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)              113   4e-25
SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)                    30   4.5  
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)                      29   5.9  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score =  113 bits (271), Expect = 4e-25
 Identities = 81/240 (33%), Positives = 120/240 (50%), Gaps = 23/240 (9%)

Query: 35  FYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCSGRSVGLCV 94
           F+A + V ITGGTGF+GK      + S  ++K      RS      P          L  
Sbjct: 7   FFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHT-PQQRIDNM---LQT 62

Query: 95  QIFEKVRERCPWQLDKLRVLPGNLERPLLGLEPVTIARL-HQVSVVFHNAATLKFDEALR 153
           ++F+ VRE  P QLDK+  + G++    LGL P  +A +   V +VFH+AAT++FDE LR
Sbjct: 63  RLFQNVRENDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDEELR 122

Query: 154 KAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAELSRVEERVYXXXXXXXXXXXXXX 213
                       +  +C      +A VHVS+ Y+N +   V+E++Y              
Sbjct: 123 ------------VFFICP-----QAFVHVSSTYANCDRDVVDEKIYPPSIEPEKLISSLE 165

Query: 214 XXXXXXXXXXTPRYIHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVP 273
                     TP  I  +PNTYTFTK++AE VL +  S   PV+IFRP+I+ ++ + P+P
Sbjct: 166 WMSDDMVKAITPYVIDQRPNTYTFTKSLAEHVLLQEAS-GLPVSIFRPSIIGASFKEPLP 224


>SB_8763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 342 HATRLSDFRATAVRVLRSLPLDSGLSYPFLIVVQNRFVYRLLEFVLQTA 390
           H+T L DF+A + R L+ LP DSG++   ++ ++    + + + +L+++
Sbjct: 484 HSTPLGDFKARSSRELQ-LPFDSGIAPVSMVTIEASMHFNVKQVLLESS 531


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 28  EAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSK-----PSLK-TCNETARSVPPRPLP 81
           EAP++  F + + V   G      +  + +  V+K     PSLK T + T    PP+  P
Sbjct: 848 EAPVVKTFTSAKDVLDRGRGNIPPRVEKALSSVAKKTEDTPSLKLTFSRTPVDSPPKT-P 906

Query: 82  GPLCSGRSVGLCVQIFEKVRERCPWQLDKLRVLPGNLERPLLGLEPV-TIARLHQVSVVF 140
               SG   G+ + +  K+R++   +L++       L++ +   E +  + R+ +     
Sbjct: 907 EKASSGALKGVSLDLLNKIRKKEAKKLEEDLTRDPGLDKKMTMRERLPELCRILKTYFTT 966

Query: 141 HNAATLKFDEALRK 154
              A +  ++A+ K
Sbjct: 967 ERKAAIPLEDAVLK 980


>SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)
          Length = 950

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 359 SLPLDSG--LSYPFLIVVQNRFVYRLLEFVLQTAPL-HVAECLRQTDGQKARYHNVPCVQ 415
           S+ LDS     Y F +   + +V     FVL    L +  E  +QT   K  Y+NVP V 
Sbjct: 468 SMTLDSSNLKKYEFQVGFSDEYVPEN-GFVLHDTRLTYYTEGNKQTFKAKGNYNNVPGVS 526

Query: 416 LKVLVVQQRNRGRLRLVHYTTIV 438
            K +V +  N G +  V   T +
Sbjct: 527 FKTVVDKDVNTGSVHAVGKATSI 549


>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
          Length = 281

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 28  EAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSK-----PSLK-TCNETARSVPPRPLP 81
           EAP++  F + + V   G      +  + +  V+K     PSLK T + T    PP+  P
Sbjct: 164 EAPVVKTFTSAKDVLDRGRGNIPPRVEKALSSVAKKTEDTPSLKLTFSRTPVDSPPKT-P 222

Query: 82  GPLCSGRSVGLCVQIFEKVRER 103
               SG   G+ + +  K+R++
Sbjct: 223 EKASSGALKGVSLDLLNKIRKK 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,199
Number of Sequences: 59808
Number of extensions: 559084
Number of successful extensions: 1172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 6
length of query: 458
length of database: 16,821,457
effective HSP length: 85
effective length of query: 373
effective length of database: 11,737,777
effective search space: 4378190821
effective search space used: 4378190821
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)