GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
         (458 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...   175   4e-44
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    32   0.97 
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    31   1.7  
AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical ...    31   2.2  
AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical ...    30   3.0  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score =  175 bits (427), Expect = 4e-44
 Identities = 107/309 (34%), Positives = 162/309 (52%), Gaps = 10/309 (3%)

Query: 36  YAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARS-VPPRPLPGPLCSGRSVGLCV 94
           YAG SV +TGGTGF+GK      V+ +  L T ++     +  R   G     R  GL  
Sbjct: 9   YAGSSVLLTGGTGFLGK------VIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLH 62

Query: 95  Q-IFEKVRERCPWQLDKLRVLPGNLERPLLGLEPVTIARLHQ-VSVVFHNAATLKFDEAL 152
             +F ++R+  P   DKL+ + G++    LG++P  +  +   V+VV H+AAT+KFDE L
Sbjct: 63  DPLFNRIRQEKPEAFDKLKAIGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEHL 122

Query: 153 RKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAELSRVEERVYXXXXXXXXXXXXX 212
           R AV  NV G   ++D+C  + +L+ LVHVSTAY+N +     E++Y             
Sbjct: 123 RAAVTMNVIGTKRIIDLCHQIKDLKVLVHVSTAYANCDRFETTEKIYKSPMAPQKLVDAL 182

Query: 213 XXXXXXXXXXXTPRYIHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPV 272
                      TP+ +  +PNTYT TKA+AE  + E  ++  PV I RP+IV +  + P+
Sbjct: 183 SWMDDETLTKITPKILGLRPNTYTLTKALAESTI-ETEAKDIPVIIIRPSIVGAMWQGPL 241

Query: 273 PGWIENLNGPSXXXXXXXXXLMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCGSL 332
           PGW +N+NGP+         ++         +AD IPVD+V + +IA A    S     +
Sbjct: 242 PGWTDNINGPTGIFAAVGRGVLTNMCGSSESKADIIPVDIVANMIIASASYRTSINTTEI 301

Query: 333 RVYNCASGE 341
            V +C+SGE
Sbjct: 302 PVIHCSSGE 310


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 68  CNETARSVPPRPLPGPLCSGRSVGLCVQIFEKVRERCPWQ-LDKLRVLPGNLERPLLGLE 126
           C E  RSV PR L  P  S R+V    ++FEK+R++C  Q L     +        +G+ 
Sbjct: 410 CFEIMRSVKPRLLLDPFIS-RNVD---ELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMS 465

Query: 127 PVTIARLHQVSVVFHNAATLKFD--EALRKAVDQ-NVRGLLSLVDV-CDALPNLEALVHV 182
              + +L  + ++     +LK D  E + + +D+ +   +L  V+V CD        +  
Sbjct: 466 SAEL-QLSLLELIEQKHVSLKIDQNEGIVRILDERDENAILKRVNVTCDRATQKAKSLLW 524

Query: 183 STAYSNAELSRVEER 197
            T  + A +  + ++
Sbjct: 525 KTTLAGANIHSISDK 539


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 14  VLQERGGTMADMSEEAPILPRFYAGRSVFITGGTGFMG 51
           +L + G   A M E+ P LP+F       I G T F+G
Sbjct: 268 ILTDSGDFPASMREKLPFLPKFSEEEKKLIKGSTDFLG 305


>AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical
           protein W02H5.2 protein.
          Length = 201

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 368 YPFLIVVQNRFVYRLLEFVLQTAPLHVAECLRQTD 402
           Y F  ++QNR ++R+  FVL + P       RQTD
Sbjct: 13  YMFSRILQNRSIFRIFGFVLMSDPFAPQANTRQTD 47


>AC025723-5|AAK29936.2|  183|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.5 protein.
          Length = 183

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 332 LRVYNCASGEHATRLSDFRATAVRVLRSLPLD 363
           L VY+ A+     +L D++A A +VL  LP D
Sbjct: 132 LHVYDSATAAPEVKLRDYKAEAAKVLNELPAD 163


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 356 VLRSLPLDSGLSYPFLIVVQNRFVYRLLEFV-LQTAPLHVAECLRQTD 402
           ++ S  ++ G  YPFLI+    F Y ++ F  L +AP  V + +  +D
Sbjct: 189 LIASWTVNIGYQYPFLIISTALFTYSIIIFFNLPSAPWEVKQQIEGSD 236


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,911
Number of Sequences: 27539
Number of extensions: 408742
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 6
length of query: 458
length of database: 12,573,161
effective HSP length: 84
effective length of query: 374
effective length of database: 10,259,885
effective search space: 3837196990
effective search space used: 3837196990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)