GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
         (458 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    25   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   7.1  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 177 EALVHVSTAYSNAELSRVEERV 198
           E LVH+ST  S+ + +RV +RV
Sbjct: 114 ELLVHISTNKSDVKATRVYKRV 135


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 19  GGTMADMSEEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPR 78
           G T    S +A  L R  A   VF  G    +  +  V+   + PSL + N T  +  P 
Sbjct: 578 GATCLGSSIKAMWLRRALASLMVFSLGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPY 637

Query: 79  P 79
           P
Sbjct: 638 P 638


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,548
Number of Sequences: 429
Number of extensions: 5605
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 458
length of database: 140,377
effective HSP length: 60
effective length of query: 398
effective length of database: 114,637
effective search space: 45625526
effective search space used: 45625526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)