Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002160-TA|BGIBMGA002160-PA|IPR013120|Male sterility
C-terminal
(458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to... 71 2e-12
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 70 4e-12
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 69 6e-12
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 64 1e-10
At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to... 64 1e-10
At3g56700.1 68416.m06307 male sterility protein, putative simila... 62 6e-10
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to... 55 1e-07
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 51 2e-06
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S... 32 0.91
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S... 32 0.91
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 31 1.6
At1g11600.1 68414.m01332 cytochrome P450, putative similar to cy... 31 2.1
>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 409
Score = 70.5 bits (165), Expect = 2e-12
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 232 PNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXX 291
PNTY FTKAM E +L P+ I RPTI+ S P PGWIE L
Sbjct: 161 PNTYVFTKAMGEMLLGHYRETM-PIVIIRPTIITSTFSDPFPGWIEGLKTVDSVIIFYGK 219
Query: 292 XLMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCGSLRVYNCAS 339
++ F D IPVD+VV+ MIA+A + GS VY+ S
Sbjct: 220 GILKCFLVDQKTVCDIIPVDMVVNAMIAIAAD-HCHDSGSHTVYHVGS 266
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 69.7 bits (163), Expect = 4e-12
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 228 IHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXX 287
+H PNTY FTK+M E +L + P+ I RPT++ S P PGWIE L
Sbjct: 231 LHGWPNTYVFTKSMGEMLLGKH-KENLPLVIIRPTMITSTLSEPFPGWIEGLRTVDSVII 289
Query: 288 XXXXXLMHVFRAKLALRADFIPVDVVVDNMI-AVAWETGSEPCGSLRVYNCASG-EHATR 345
++ F + D IPVD+V + MI A A G G VY+ S ++
Sbjct: 290 AYGKGVLKCFLVDVNSVCDMIPVDMVANAMITAAAKHAGGS--GVHMVYHVGSSHQNPVT 347
Query: 346 LSDFRATAVRVLRSLPLDSGLSYPFLIVVQNRFVYRLLEFVL 387
+ AVR PL S + + V + RF+ + F L
Sbjct: 348 FGEIHEIAVRYFTKNPLRS-RNGSLITVSKVRFIPTMALFSL 388
Score = 42.3 bits (95), Expect = 6e-04
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 34 RFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCSGRSVGLC 93
+F +++ +TG TGF+ K + +P++K R+ L R+
Sbjct: 7 QFLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRL---RTEVFE 63
Query: 94 VQIFEKVRERCPWQ------LDKLRVLPGNLERPLLGLEPVTIARLHQ--VSVVFHNAAT 145
++F+ +R+ + +K+ +PG++ LG+ + Q + +V + AAT
Sbjct: 64 KELFKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAAT 123
Query: 146 LKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAY 186
FDE + N G L++++ ++ L+HVSTAY
Sbjct: 124 TNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAY 164
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 68.9 bits (161), Expect = 6e-12
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 228 IHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXX 287
+H PNTY FTKAM E +L + P+ I RPT++ S P PGWIE L
Sbjct: 228 LHGWPNTYVFTKAMGE-MLMGKYRENLPLVIIRPTMITSTIAEPFPGWIEGLKTLDSVIV 286
Query: 288 XXXXXLMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCGSLRVYNCASG-EHATRL 346
+ F A D IP D+VV+ M+A A S G +Y+ S ++
Sbjct: 287 AYGKGRLKCFLADSNSVFDLIPADMVVNAMVAAA-TAHSGDTGIQAIYHVGSSCKNPVTF 345
Query: 347 SDFRATAVRVLRSLPLDSGLSYPFLIVVQNRFVYRLLEFVL 387
R PL P +IVV+ + + +F L
Sbjct: 346 GQLHDFTARYFAKRPLIGRNGSP-IIVVKGTILSTMAQFSL 385
Score = 45.2 bits (102), Expect = 9e-05
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 34 RFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCSGRSVGLC 93
+F +++ ITG GF+ K + +P++K R+ + L RS +
Sbjct: 7 QFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRL---RSEVME 63
Query: 94 VQIFEKVRERC------PWQLDKLRVLPGNLERPLLGLEPVT-IARL-HQVSVVFHNAAT 145
+ +F+ +R +K+ +PG++ LGL+ I R+ ++ ++ + AAT
Sbjct: 64 IDLFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAAT 123
Query: 146 LKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAE 190
FDE + N G L++++ + L+HVSTAY + E
Sbjct: 124 TNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYISGE 168
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 64.5 bits (150), Expect = 1e-10
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 228 IHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXX 287
+H PNTY FTK+M E +L P+ I RPT++ S P PGWIE L
Sbjct: 231 LHGWPNTYVFTKSMGEMLLGNH-KENLPLVIIRPTMITSTLFEPFPGWIEGLRTVDSVII 289
Query: 288 XXXXXLMHVFRAKLALRADFIPVDVVVDNMIAVA 321
++ F + D IP D+V + MIA A
Sbjct: 290 AYGKGVLKCFLVDVNSVCDMIPADMVANAMIAAA 323
Score = 38.3 bits (85), Expect = 0.010
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 11/160 (6%)
Query: 35 FYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPRPLPGPLCSGRSVGLCV 94
F +++ +TG TGF+ K + +P++ R+ L R+
Sbjct: 8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRL---RTEAFEK 64
Query: 95 QIFEKVRERC-PWQLDKL---RVLP--GNLERPLLGLEPVTIARLHQ--VSVVFHNAATL 146
+F+ +R+ +L+ L +V+P G++ LG++ + Q + +V + AAT
Sbjct: 65 DLFKVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATT 124
Query: 147 KFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAY 186
FDE + N G L++++ + L+HVSTAY
Sbjct: 125 NFDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAY 164
>At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 433
Score = 64.5 bits (150), Expect = 1e-10
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 228 IHPKPNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXX 287
+H PNTY FTK+M E +L P+ I RPT++ S P PGWIE L
Sbjct: 230 LHGWPNTYVFTKSMGEMLLGNYREN-LPIVIIRPTMITSTFSEPFPGWIEGLRTIDSVIV 288
Query: 288 XXXXXLMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCGSLRVYNCAS 339
+ F A D IPVD+V + M+ A + GS VY+ S
Sbjct: 289 AYGKGRLKCFLADPNSVLDLIPVDMVANAMVTAA-AIHAGKLGSQTVYHVGS 339
Score = 38.7 bits (86), Expect = 0.008
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 109 DKLRVLPGNLERPLLGLEPVTIAR--LHQVSVVFHNAATLKFDEALRKAVDQNVRGLLSL 166
+K+ +PG++ LG++ + + +++ ++ + AAT FDE + N G L++
Sbjct: 85 EKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDERYDVGLSVNTFGPLNV 144
Query: 167 VDVCDALPNLEALVHVSTAYSNAELS 192
++ + L+HVSTAY E S
Sbjct: 145 LNFAKKCVKGQLLLHVSTAYVRGEKS 170
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 62.5 bits (145), Expect = 6e-10
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 233 NTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXXX 292
N+YTFTKA+ E V+ + PV I RP+I+ S+ P PGWI+
Sbjct: 277 NSYTFTKAIGEAVIHSKRGN-LPVVIIRPSIIESSYNEPFPGWIQGTRMADPIILAYAKG 335
Query: 293 LMHVFRAKLALRADFIPVDVVVDNMIAVAWETGSEPCG--SLRVYNCASGEH 342
+ F A D IPVD+V + IA + G CG +VYN S H
Sbjct: 336 QISDFWADPQSLMDIIPVDMVANAAIAAMAKHG---CGVPEFKVYNLTSSSH 384
>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein;
No start codon identified, may contain anomalous
splicing at 5' end.
Length = 380
Score = 54.8 bits (126), Expect = 1e-07
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 232 PNTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXX 291
PNTY FTKAM E ++ + + + RP+I+ S + P PGW E +
Sbjct: 125 PNTYVFTKAMGEMMVGTKREN-LSLVLLRPSIITSTFKEPFPGWTEGIRTIDSLAVGYGK 183
Query: 292 XLMHVFRAKLALRADFIPVDVVVDN-MIAVAWETGSE 327
+ F L +D +P D+VV++ ++++A + G +
Sbjct: 184 GKLTCFLCDLDAVSDVMPADMVVNSILVSMAAQAGKQ 220
Score = 45.6 bits (103), Expect = 7e-05
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 133 LHQVSVVFHNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAELS 192
+HQV + + AAT KFDE A+ N G L++++ ++ LVHVSTAY E S
Sbjct: 2 IHQVDAIVNLAATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYVCGEKS 61
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 50.8 bits (116), Expect = 2e-06
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 233 NTYTFTKAMAECVLQERTSRRYPVAIFRPTIVISADRHPVPGWIENLNGPSXXXXXXXXX 292
+TY FTKAM E ++ T PV I RP+++ S + P PGW+E
Sbjct: 355 DTYVFTKAMGEMMINS-TRGDVPVVIIRPSVIESTYKDPFPGWMEGNRMMDPIVLCYGKG 413
Query: 293 LMHVFRAKLALRADFIPVDVVVDNMIAVAWETG---SEPCGSLRVYNCAS 339
+ F D +P D+VV+ +A + G S+P + VY AS
Sbjct: 414 QLTGFLVDPKGVLDVVPADMVVNATLAAIAKHGMAMSDPEPEINVYQIAS 463
Score = 48.4 bits (110), Expect = 1e-05
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 19 GGTMADMSEEAPILPRFYAGRSVFITGGTGFMGKYTRVICVVSKPSLKTCNETARSVPPR 78
G +M M E I+ F G+ ITG TGF+ K + P + ++ + +
Sbjct: 112 GASMVGMKEGLGIIS-FLQGKKFLITGSTGFLAKVLIEKVLRMAPDV---SKIYLLIKAK 167
Query: 79 PLPGPLCSGRSVGLCVQIFEKVRER-----CPWQLDKLRVLPGNLERPLLGLEPVTIARL 133
+ ++ L ++F ++E + L KL + GN+ +GL+ + +
Sbjct: 168 SKEAAIERLKNEVLDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEI 227
Query: 134 -HQVSVVFHNAATLKFDEALRKAVDQNVRGLLSLVDVCDALPNLEALVHVSTAYSNAE-L 191
+V V+ ++AA F+E A+D N RG +L+ L+ + VSTAY N +
Sbjct: 228 AKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQ 287
Query: 192 SRVEERVY 199
R+ E+ +
Sbjct: 288 GRIMEKPF 295
>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1050
Score = 31.9 bits (69), Expect = 0.91
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + SRR P+ RPTI+ AD HP PG
Sbjct: 739 VLVDALSRRIPLVSDRPTIIFGADVTHPHPG 769
>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
SP|O04379 Argonaute protein (AGO1) {Arabidopsis
thaliana}; contains Pfam profiles PF02171: Piwi domain,
PF02170: PAZ domain
Length = 1048
Score = 31.9 bits (69), Expect = 0.91
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 245 VLQERTSRRYPVAIFRPTIVISAD-RHPVPG 274
VL + SRR P+ RPTI+ AD HP PG
Sbjct: 737 VLVDALSRRIPLVSDRPTIIFGADVTHPHPG 767
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 310 VDVVVDNMIAVAWETGSEPCGSLRVYNCASGEHATRLSDFRATAVRVLRSLPLDSGLSYP 369
V V+ + IA+A++ S+P L + G +++F ATA R LRS D P
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGV-ITEFPATATRYLRSPCSDLNKDQP 666
Query: 370 FLIV 373
+ I+
Sbjct: 667 YAIL 670
>At1g11600.1 68414.m01332 cytochrome P450, putative similar to
cytochrome P450 77A2 (CYPLXXVIIA2) (P-450EG5) [Solanum
melongena] and cytochrome P450 77A3 (SP:O48928) [Glycine
max]; is a member of the PF|00067 Cytochrome P450
family. ESTs gb|Z30775 and gb|Z30776 come from this gene
Length = 510
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 1 MFVTDTSTLHEGCVLQERGGTMADMSEEAPILPRFYAGRSVFITGGTGFMGKYTR---VI 57
+ +TD +HE V +RG T A ++PI F G+ + G + + R V
Sbjct: 83 IIITDEKLIHEALV--QRGPTFASRPPDSPIRLMFSVGKCAINSAEYGSLWRTLRRNFVT 140
Query: 58 CVVSKPSLKTCN 69
+V+ P +K C+
Sbjct: 141 ELVTAPRVKQCS 152
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.325 0.139 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,664
Number of Sequences: 28952
Number of extensions: 389855
Number of successful extensions: 1052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1022
Number of HSP's gapped (non-prelim): 23
length of query: 458
length of database: 12,070,560
effective HSP length: 84
effective length of query: 374
effective length of database: 9,638,592
effective search space: 3604833408
effective search space used: 3604833408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -