Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 75 9e-15
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 71 2e-13
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 68 2e-12
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 33 0.035
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.11
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.0
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 7.0
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.2
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 75.4 bits (177), Expect = 9e-15
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
C NC + NT LWRR+ G P+CNACGLYYK+HG++RP+ M+K
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKK 213
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 74 GQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPL 114
GQ C+NC T+LWRR D +CNACGLY K RP+
Sbjct: 9 GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARPV 49
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 70.5 bits (165), Expect = 2e-13
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
CTNC +R T LWRR+ DG+P+CNACGL+ K++G+ RPL+++ D I+
Sbjct: 635 CTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIK 680
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 67.7 bits (158), Expect = 2e-12
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGI 121
C NC S T+LWR++ G+ VCNACGLY +LHG NRP+ ++K+ I
Sbjct: 419 CANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKI 463
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 67 QSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLAMRKDG 120
Q R H C NCG T LWRR +D +CNACGLY K +G+ RPL+ R G
Sbjct: 357 QKKHREH--VCFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPLSPRNKG 409
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 33.5 bits (73), Expect = 0.035
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 77 CTNCGSRNTTLWRRN---NDGEPVCNACGLYYKLHGINRP 113
C NCG+ T WR N +CNACG+Y+ RP
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRP 390
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 76 CCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
CC +C S + +R N P+C+ C + + +P ++ +G Q+
Sbjct: 897 CCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQS 944
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 76 CCTNCGS---RNTTLWRRNNDGEPVCNAC 101
CCT C + + + +DG PVC++C
Sbjct: 46 CCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 42 MGSWCAPY----DALQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNT 85
M +W P+ PP + + G P S +NCGS N+
Sbjct: 95 MSNWLNPFAFDNTMNSAPPLFTSTNMGSPNSLENSTNPLLSNCGSPNS 142
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 71 RRHGQCCTNCGSRNTTLWRRNN--DGEP 96
+R CC NC R+TT + +N DG P
Sbjct: 478 QREVTCCRNCVERSTTWFIESNYHDGLP 505
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,790
Number of Sequences: 5004
Number of extensions: 18784
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 281
length of database: 2,362,478
effective HSP length: 72
effective length of query: 209
effective length of database: 2,002,190
effective search space: 418457710
effective search space used: 418457710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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