Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0153 - 28051496-28051801,28051933-28052271 42 7e-04
01_06_0154 - 27049218-27049517,27049679-27050107 42 7e-04
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 41 0.001
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 40 0.003
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 39 0.005
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 39 0.005
03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622 37 0.016
11_01_0560 - 4413174-4414469 37 0.021
12_01_0442 + 3495333-3496484 36 0.028
03_01_0217 - 1712979-1713794 36 0.028
01_06_0683 - 31173763-31174635,31175146-31175436 36 0.028
10_08_0898 + 21424379-21424792,21424974-21425723 35 0.084
03_01_0316 + 2487917-2488003,2488104-2488676 35 0.084
05_06_0110 + 25632514-25632834,25633200-25634039 34 0.11
02_05_1145 + 34429060-34429401,34430053-34430967 33 0.19
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 33 0.26
12_02_1180 + 26727171-26727239,26728782-26729642 32 0.45
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 32 0.45
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 32 0.45
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941... 32 0.59
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 32 0.59
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 30 1.8
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 29 4.2
05_07_0238 + 28597399-28598286 29 4.2
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704... 29 5.5
02_05_0840 - 32118332-32118376,32118420-32118531,32119074-321191... 29 5.5
03_05_0161 + 21400580-21401695 28 7.3
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 63 CGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C AA R + C NC + +T LWR G + +CNACG+ YK
Sbjct: 80 CNKEAPAAGRLPRRCANCDTMSTPLWRNGPRGPKSLCNACGIRYK 124
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 57 AYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
A RT G +AA + C NC + +T LWR G + +CNACG+ YK
Sbjct: 104 APRTEPSGGAGAAAASAPRRCANCDTTSTPLWRNGPRGPKSLCNACGIRYK 154
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 68 SAARRHGQ-CCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+AA G+ CC CG+ T +WR G +CNACG+ Y+
Sbjct: 17 AAAEEAGRRCCVECGATTTPMWRGGPTGPRSLCNACGIRYR 57
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 52 LQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYKLHGI 110
LQ P A + + +A R G+ C +CG+ T WR D +CNACG Y+ +
Sbjct: 752 LQEPSASANLAHAV--AATARAGRECAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQL 809
Query: 111 N 111
N
Sbjct: 810 N 810
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 68 SAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+AA G C +CG+ T WR +G +CNAC + Y+
Sbjct: 594 TAAAAKGLQCRHCGTTETPQWRHGPEGHRTLCNACSMRYR 633
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 68 SAARRHGQCCTNCGSRNTTLWRRNNDGE-PVCNACGLYYK 106
+AA+ + CT+CG+ T W D +CNACG Y+
Sbjct: 984 TAAKAVERRCTHCGTTKTPAWLSGPDSRGKLCNACGKQYR 1023
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 53 QRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
Q PP P RR C++CG + T WR +G + +CNACG+ YK
Sbjct: 324 QLPPHPSGAAASAPAPGDRR----CSHCGVQKTPQWRAGPEGAKTLCNACGVRYK 374
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 53 QRPPAYRTVQCG---IPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
Q+PP G +P + RR C++CG + T WR +G + +CNACG+ YK
Sbjct: 283 QQPPHLAAAAGGGAALPATGDRR----CSHCGVQKTPQWRAGPEGAKTLCNACGVRYK 336
>03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622
Length = 136
Score = 37.1 bits (82), Expect = 0.016
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 75 QCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+ CT+C + T LWR G + +CNACG+ Y+
Sbjct: 25 KACTDCHTTKTPLWRGGPSGPKSLCNACGIRYR 57
>11_01_0560 - 4413174-4414469
Length = 431
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 72 RHGQCCTNCGSRNTTLWRRNNDGE-PVCNACGLYYKL 107
R + C++CG+ T WR DG +CNACG+ K+
Sbjct: 358 RKDRRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKM 394
>12_01_0442 + 3495333-3496484
Length = 383
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDGE-PVCNACGLYYK 106
C +CGS T WR G +CNACG+ Y+
Sbjct: 248 CVHCGSTETPQWREGPTGRGTLCNACGVRYR 278
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 70 ARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYKLHG 109
A + + C NC + T WR G +CNACG+ + G
Sbjct: 113 AAKRARRCLNCDAVETPQWRSGPMGRSTLCNACGVRLRAVG 153
>03_01_0217 - 1712979-1713794
Length = 271
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 63 CGIPQSAARRHGQ--CCTNCGSRNTTLWRRNNDG-EPVCNACGLYYKL 107
C P R+ G+ C +C + T WR DG +CNACG+ Y++
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRI 219
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 36.3 bits (80), Expect = 0.028
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 64 GIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
G +AA G+ C +C + T WR G + +CNACG+ YK
Sbjct: 251 GSAPAAAAGEGRRCLHCETDKTPQWRTGPMGPKTLCNACGVRYK 294
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 34.7 bits (76), Expect = 0.084
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C S T WR G + +CNACG+ +K
Sbjct: 278 CTHCASEKTPQWRTGPLGPKTLCNACGVRFK 308
>03_01_0316 + 2487917-2488003,2488104-2488676
Length = 219
Score = 34.7 bits (76), Expect = 0.084
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C T WR DG +CNACG+ +K
Sbjct: 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFK 154
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 66 PQSAARR--HGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
P +AA+ G+ C +C + T WR G + +CNACG+ YK
Sbjct: 242 PNAAAQAAAEGRRCLHCETDKTPQWRTGPMGPKTLCNACGVRYK 285
>02_05_1145 + 34429060-34429401,34430053-34430967
Length = 418
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 65 IPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+P RR CT+C T WR G + +CNACG+ YK
Sbjct: 327 LPPGTVRR----CTHCQIEKTPQWRAGPLGPKTLCNACGVRYK 365
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 33.1 bits (72), Expect = 0.26
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C C + T +WR G +CNACG+ Y+
Sbjct: 670 CVECRATTTPMWRSGPTGPRSLCNACGIRYR 700
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C S T WR G + +CNACG+ +K
Sbjct: 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFK 269
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C++C + T LWR G + +CNACG+
Sbjct: 188 CSDCNTTKTPLWRSGPCGPKSLCNACGI 215
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C++C + T LWR G + +CNACG+
Sbjct: 178 CSDCNTTKTPLWRSGPCGPKSLCNACGI 205
>03_05_1042 -
29893649-29893721,29893960-29894033,29894111-29894179,
29894333-29894438,29894548-29894664,29895412-29895527,
29895612-29895698,29897281-29897309,29897914-29898169
Length = 308
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 77 CTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHG-INRPLAMRKDGIQ 122
C NCG SR T RR G +CNACGL + G + PL K +Q
Sbjct: 203 CQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQ 252
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 31.9 bits (69), Expect = 0.59
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 64 GIPQSAARRHGQCCTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHGINR 112
G P SAA C +CG + +T + RR DG +CNACGL + G R
Sbjct: 228 GRPPSAAE-----CHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMR 274
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 68 SAARRHG-QCCTNCGSRN--TTLWRRNNDG-EPVCNACGLYY 105
S A R G CTNCG + T + R +G + CNACGL +
Sbjct: 1390 SLAHRKGITFCTNCGESSDATPMMRHAPNGTKSFCNACGLMW 1431
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 77 CTNCG-SRNTTL-WRRNNDG-EPVCNACGLYYK 106
C CG S N T RR DG +CNACG+ Y+
Sbjct: 121 CLRCGISGNATPHMRRGPDGPRTLCNACGIAYR 153
>05_07_0238 + 28597399-28598286
Length = 295
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 49 YDALQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPV 97
Y Q PA +C + C NCG+ +T LWR G V
Sbjct: 102 YCGQQGRPATGAAKCAAGAGHDALLDRRCANCGTASTPLWRNGPRGPKV 150
>03_05_0713 -
27070063-27070126,27070202-27070290,27070369-27070428,
27071110-27071215,27071309-27071428,27072340-27072476,
27072561-27072647,27073660-27073956
Length = 319
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 77 CTNCGS--RNTTLWRRNNDG-EPVCNACGLYYKLHGINR 112
C NCG+ + T RR G +CNACGL + G R
Sbjct: 215 CQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLR 253
>02_05_0840 -
32118332-32118376,32118420-32118531,32119074-32119196,
32119267-32119379,32119460-32119605,32120048-32120162,
32120360-32120473
Length = 255
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 64 GIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNAC 101
G Q AR + CT CG R L +R E +C C
Sbjct: 7 GPRQPPARAGSRLCTRCGERKAAL-KRPKTLEQICREC 43
>03_05_0161 + 21400580-21401695
Length = 371
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 55 PPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNND--GEP--VCNACGLYYKLHGI 110
PPA + Q +P + G C C S NT NN +P C C Y+ G
Sbjct: 28 PPAQQQQQQPLPPPPPQEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGA 87
Query: 111 NR 112
R
Sbjct: 88 LR 89
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,920,091
Number of Sequences: 37544
Number of extensions: 138332
Number of successful extensions: 323
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 32
length of query: 281
length of database: 14,793,348
effective HSP length: 81
effective length of query: 200
effective length of database: 11,752,284
effective search space: 2350456800
effective search space used: 2350456800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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