GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
         (281 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    91   1e-18
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  48   9e-06
SB_57736| Best HMM Match : GCC2_GCC3 (HMM E-Value=4.2e-09)             31   0.80 
SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)                  30   2.4  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           29   5.6  

>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 35/50 (70%), Positives = 42/50 (84%)

Query: 74  GQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
           G  C NC +  TTLWRRN +G+PVCNACGLY+KLH +NRPL+M+KDGIQT
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRPLSMKKDGIQT 458


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query: 77  CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGI 110
           C +CG   T LWR   DG P+CNACG+ YK + I
Sbjct: 223 CASCGVAKTPLWRDAEDGTPLCNACGIRYKKYRI 256


>SB_57736| Best HMM Match : GCC2_GCC3 (HMM E-Value=4.2e-09)
          Length = 322

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 46  CAPYDALQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACG 102
           C  YD    PPA+ T  C I Q  +     C   C  ++ T  + NN    VC+A G
Sbjct: 99  CTVYD----PPAHGTRVCNIDQQVSTSQAMCTVQC-KQDYTFVKENNYIAYVCSAEG 150


>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
          Length = 225

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 77  CTNCGSRNTTLWRRNNDGEPVCNACGL 103
           C  C    + +WR+  +GE +CN C L
Sbjct: 9   CFACKINESLMWRKGANGEILCNCCHL 35


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 64  GIPQSAARRHGQCCTNC--GSRNTTLWRRNNDGEPVCNACGLYYKLHGINR 112
           G P        +CC  C  G+   T   RNN  + VC+AC +   +   NR
Sbjct: 67  GCPDGTFNEGDKCCKLCPPGTFLVTPCGRNNTTDSVCDACPINTFMSHANR 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.133    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,762,248
Number of Sequences: 59808
Number of extensions: 170889
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 5
length of query: 281
length of database: 16,821,457
effective HSP length: 81
effective length of query: 200
effective length of database: 11,977,009
effective search space: 2395401800
effective search space used: 2395401800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)