GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
         (281 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...   120   5e-29
AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA fact...    44   5e-06

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score =  120 bits (289), Expect = 5e-29
 Identities = 49/59 (83%), Positives = 54/59 (91%)

Query: 65  IPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
           + Q+A RR G CCTNCG+R TTLWRRNNDGEPVCNACGLY+KLHG+NRPLAMRKDGIQT
Sbjct: 165 VSQTATRRLGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYFKLHGVNRPLAMRKDGIQT 223



 Score = 74.5 bits (175), Expect = 3e-15
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 36  YGQNVVMGSWCAPYDALQRPPAY-RTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG 94
           Y QNV+MGSW A YD    P  + RT             G+ C NCG+ +T LWRR+  G
Sbjct: 83  YAQNVMMGSWRA-YD----PTGFQRTSPYDSAMDFQFGEGRECVNCGAISTPLWRRDGTG 137

Query: 95  EPVCNACGLYYKLHGINRPL 114
             +CNACGLY+K++G+NRPL
Sbjct: 138 HYLCNACGLYHKMNGMNRPL 157



 Score = 24.6 bits (51), Expect = 3.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 240 YHSQQHYLHALQYXXXXXXXXXXXXFLHQRNVTAHAKLMAST 281
           +H+  H+ H   +            + HQ NV   AKLMAS+
Sbjct: 498 HHAHPHHHH--HHHHHHPTAADLAGYHHQHNVIQAAKLMASS 537


>AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA factor
           protein.
          Length = 77

 Score = 44.0 bits (99), Expect = 5e-06
 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 80  CGSRNTTLWRRNNDGEPVCNACGLYYKLH-GINRP 113
           CGS +T LWRR+  G  +CNAC LY + + G NRP
Sbjct: 1   CGSSDTPLWRRDIVGHTLCNACALYTRQNPGTNRP 35



 Score = 38.3 bits (85), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 66 PQSAARRHGQCCTNCGSRNTTLWRRNN 92
          P    RR G  C NC +  TTLWRRNN
Sbjct: 50 PAQGNRRSGVTCANCQTTTTTLWRRNN 76


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.133    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,403
Number of Sequences: 2123
Number of extensions: 5350
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 281
length of database: 516,269
effective HSP length: 63
effective length of query: 218
effective length of database: 382,520
effective search space: 83389360
effective search space used: 83389360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)