Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
(281 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 90 1e-18
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 90 1e-18
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 90 1e-18
Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical pr... 89 4e-18
U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor pro... 89 4e-18
Z50027-6|CAD44111.1| 72|Caenorhabditis elegans Hypothetical pr... 77 2e-14
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 70 2e-12
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 70 2e-12
AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA transcri... 68 7e-12
AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like tra... 68 7e-12
AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying de... 68 7e-12
Z69663-3|CAA93510.2| 226|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AF146517-1|AAD33964.1| 226|Caenorhabditis elegans GATA transcri... 67 1e-11
AF068708-9|AAC17756.1| 198|Caenorhabditis elegans Hypothetical ... 60 2e-09
Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z81555-3|CAB04513.1| 221|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AF026555-1|AAB97516.1| 221|Caenorhabditis elegans GATA transcri... 51 1e-06
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 38 0.011
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 38 0.011
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 38 0.011
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 37 0.018
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 37 0.018
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 36 0.032
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 36 0.032
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 31 1.2
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 31 1.2
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 31 1.2
Z49867-1|CAA90027.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical ... 29 2.8
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 29 4.9
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 29 4.9
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 90.2 bits (214), Expect = 1e-18
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 67 QSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
Q+A +R G C NC + TTLWRRN +G PVCNACGLY+KLH + RP+ M+KDGIQT
Sbjct: 262 QNAQKRTGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKKDGIQT 318
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
C NCG NT LWRR+ G +CNACGLY+K++ RPL K
Sbjct: 217 CVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPK 258
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 90.2 bits (214), Expect = 1e-18
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 67 QSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
Q+A +R G C NC + TTLWRRN +G PVCNACGLY+KLH + RP+ M+KDGIQT
Sbjct: 334 QNAQKRTGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKKDGIQT 390
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
C NCG NT LWRR+ G +CNACGLY+K++ RPL K
Sbjct: 289 CVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPK 330
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 90.2 bits (214), Expect = 1e-18
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 67 QSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQT 123
Q+A +R G C NC + TTLWRRN +G PVCNACGLY+KLH + RP+ M+KDGIQT
Sbjct: 262 QNAQKRTGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKKDGIQT 318
Score = 58.4 bits (135), Expect = 5e-09
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
C NCG NT LWRR+ G +CNACGLY+K++ RPL K
Sbjct: 217 CVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPK 258
>Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical
protein C33D3.1 protein.
Length = 433
Score = 88.6 bits (210), Expect = 4e-18
Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 68 SAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDG-IQT 123
SA+RR G C+NC NTTLWRRN +G+PVCNACGLY+KLH I RP +M+K+G +QT
Sbjct: 228 SASRRQGLVCSNCNGTNTTLWRRNAEGDPVCNACGLYFKLHHIPRPTSMKKEGALQT 284
>U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor
protein.
Length = 433
Score = 88.6 bits (210), Expect = 4e-18
Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 68 SAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDG-IQT 123
SA+RR G C+NC NTTLWRRN +G+PVCNACGLY+KLH I RP +M+K+G +QT
Sbjct: 228 SASRRQGLVCSNCNGTNTTLWRRNAEGDPVCNACGLYFKLHHIPRPTSMKKEGALQT 284
>Z50027-6|CAD44111.1| 72|Caenorhabditis elegans Hypothetical
protein C39B10.6 protein.
Length = 72
Score = 76.6 bits (180), Expect = 2e-14
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 69 AARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKD 119
A+ R C+NC NTTLWRR +G+PVCNACGLY+KLH + RP+ M+K+
Sbjct: 8 ASHRKRLVCSNCNGTNTTLWRRKAEGDPVCNACGLYFKLHHVTRPIPMKKN 58
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
C+NC + TT WRR+ +G+ VCNACGLYY+LH +RP+ MRKD IQ
Sbjct: 265 CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTHRPVHMRKDFIQ 310
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
C+NC + TT WRR+ +G+ VCNACGLYY+LH +RP+ MRKD IQ
Sbjct: 265 CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTHRPVHMRKDFIQ 310
>AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA
transcription factor EGL-18A protein.
Length = 358
Score = 68.1 bits (159), Expect = 7e-12
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
C+NC + TT WRR+ +G+ VCN CGLYY+LH + RP+ MRK+ IQ
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHIQ 311
>AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like
transcription factorELT-5 protein.
Length = 376
Score = 68.1 bits (159), Expect = 7e-12
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
C+NC + TT WRR+ +G+ VCN CGLYY+LH + RP+ MRK+ IQ
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHIQ 311
>AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying
defective protein 18 protein.
Length = 376
Score = 68.1 bits (159), Expect = 7e-12
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQ 122
C+NC + TT WRR+ +G+ VCN CGLYY+LH + RP+ MRK+ IQ
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHIQ 311
>Z69663-3|CAA93510.2| 226|Caenorhabditis elegans Hypothetical
protein K02B9.4 protein.
Length = 226
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGI 121
C+NC +R TTLWRRN +G CNAC LY++ + RPL++RKDGI
Sbjct: 153 CSNCKTRETTLWRRNGEGGVECNACNLYFRKNNRKRPLSLRKDGI 197
>AF146517-1|AAD33964.1| 226|Caenorhabditis elegans GATA
transcription factor ELT-3 protein.
Length = 226
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGI 121
C+NC +R TTLWRRN +G CNAC LY++ + RPL++RKDGI
Sbjct: 153 CSNCKTRETTLWRRNGEGGVECNACNLYFRKNNRKRPLSLRKDGI 197
>AF068708-9|AAC17756.1| 198|Caenorhabditis elegans Hypothetical
protein C18G1.2 protein.
Length = 198
Score = 60.1 bits (139), Expect = 2e-09
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 76 CCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
CC++C + TTLWR+N++G CNAC LYY+ + + RPL++ K
Sbjct: 142 CCSHCSTTTTTLWRKNDEGNLECNACNLYYRHNKVKRPLSLCK 184
>Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical
protein F58E10.5 protein.
Length = 242
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 56 PAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRP 113
PA + + I + + C+NCG R T LWRRN GE CN C LY ++ G RP
Sbjct: 158 PARKASKNKIKKISTMHINSSCSNCGCRETKLWRRNEQGETECNPCNLYERVKGHKRP 215
>Z81555-3|CAB04513.1| 221|Caenorhabditis elegans Hypothetical
protein F58E10.2 protein.
Length = 221
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 79 NCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRP 113
NC +R TTLWRR + G CN C LY++ +GI RP
Sbjct: 142 NCRTRETTLWRRTDSGAIECNGCSLYFRKNGIQRP 176
>AF026555-1|AAB97516.1| 221|Caenorhabditis elegans GATA
transcription factor END-1 protein.
Length = 221
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 79 NCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRP 113
NC +R TTLWRR + G CN C LY++ +GI RP
Sbjct: 142 NCRTRETTLWRRTDSGAIECNGCSLYFRKNGIQRP 176
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
C NCG + + N P C AC +Y+ G+ RP ++R
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRPTSLR 317
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
C NCG + + N P C AC +Y+ G+ RP ++R
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRPTSLR 317
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
C NCG + + N P C AC +Y+ G+ RP ++R
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRPTSLR 317
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 56 PAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHGINRPL 114
P+ T P ++ + C+NC T WR E + CNAC +Y + + RP+
Sbjct: 93 PSTSTQSSTTPSNSDNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPV 152
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 56 PAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHGINRPL 114
P+ T P ++ + C+NC T WR E + CNAC +Y + + RP+
Sbjct: 93 PSTSTQSSTTPSNSDNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPV 152
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 56 PAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHGINRPL 114
P+ T P ++ + C+NC T WR E + CNAC +Y + + RP+
Sbjct: 93 PSTSTQSSTPPSNSDNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNETRPV 152
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 56 PAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHGINRPL 114
P+ T P ++ + C+NC T WR E + CNAC +Y + + RP+
Sbjct: 93 PSTSTQSSTPPSNSDNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNETRPV 152
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 74 GQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
G+ C +C + W N G +C C L+YK +G R +A R
Sbjct: 433 GRACHHCYGAESKDWHHAN-GLLLCTDCRLHYKKYGQLRQIANR 475
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 74 GQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
G+ C +C + W N G +C C L+YK +G R +A R
Sbjct: 436 GRACHHCYGAESKDWHHAN-GLLLCTDCRLHYKKYGQLRQIANR 478
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 74 GQCCTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
G+ C +C + W N G +C C L+YK +G R +A R
Sbjct: 436 GRACHHCYGAESKDWHHAN-GLLLCTDCRLHYKKYGQLRQIANR 478
>Z49867-1|CAA90027.1| 312|Caenorhabditis elegans Hypothetical
protein C33D3.3 protein.
Length = 312
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRK 118
C N GSR TL + P+C C LY+K + NRP + K
Sbjct: 70 CWNKGSRKPTLHPVTDI--PICWKCYLYFKEYRKNRPSEILK 109
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
C NC +++ L C C LY++L + RP ++R
Sbjct: 275 CENCNAKSDLLILNRVMSRHECKPCILYFRLMRVPRPASLR 315
>AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical
protein Y74C9A.4a protein.
Length = 561
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMR 117
C NC +++ L C C LY++L + RP ++R
Sbjct: 272 CENCNAKSDLLILNRVMSRHECKPCILYFRLMRVPRPASLR 312
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 47 APYDALQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCN 99
+P Q P + +Q I Q+ A+ QC C S +++N EP CN
Sbjct: 173 SPSTTTQAPQVIQ-IQLEIQQAQAQCQPQCQQQCQSSCVQQQQQSNQCEPACN 224
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 47 APYDALQRPPAYRTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDGEPVCN 99
+P Q P + +Q I Q+ A+ QC C S +++N EP CN
Sbjct: 173 SPSTTTQAPQVIQ-IQLEIQQAQAQCQPQCQQQCQSSCVQQQQQSNQCEPACN 224
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.133 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,080,340
Number of Sequences: 27539
Number of extensions: 116768
Number of successful extensions: 242
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 36
length of query: 281
length of database: 12,573,161
effective HSP length: 81
effective length of query: 200
effective length of database: 10,342,502
effective search space: 2068500400
effective search space used: 2068500400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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