Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002159-TA|BGIBMGA002159-PA|IPR000679|Zinc finger,
GATA-type, IPR002086|Aldehyde dehydrogenase, IPR000194|ATPase,
F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding
(281 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 41 8e-04
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 40 0.002
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 39 0.003
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 38 0.006
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ... 38 0.010
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 37 0.013
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 37 0.013
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 37 0.013
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 37 0.017
At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI... 36 0.023
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI... 36 0.023
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 36 0.023
At5g66320.2 68418.m08362 zinc finger (GATA type) family protein 36 0.040
At5g66320.1 68418.m08361 zinc finger (GATA type) family protein 36 0.040
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 36 0.040
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 35 0.053
At3g20750.1 68416.m02625 zinc finger (GATA type) family protein 35 0.053
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 35 0.070
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 35 0.070
At5g49300.1 68418.m06101 zinc finger (GATA type) family protein ... 34 0.12
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 34 0.12
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 34 0.12
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 34 0.12
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ... 34 0.12
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 34 0.12
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 34 0.12
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 33 0.16
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 33 0.28
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 33 0.28
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 33 0.28
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 32 0.38
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 32 0.38
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 32 0.38
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 30 1.5
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 30 1.5
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 29 2.6
At5g64160.1 68418.m08056 expressed protein 29 3.5
At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /... 29 4.6
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /... 29 4.6
At3g52240.1 68416.m05741 expressed protein 28 6.1
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 77 CTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHG--IN-RPLAMRKDG 120
C +CG NT LWR +PV CNACG ++ G +N PL R DG
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPLHARADG 54
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDGE-PVCNACGLYYK 106
C++CG+R T LWR G +CNACG+ Y+
Sbjct: 117 CSHCGTRKTPLWREGPRGAGTLCNACGMRYR 147
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 77 CTNCGSRNTTLWRRNNDGEPV-CNACGLYYKLHG--IN-RPLAMRKDGIQT 123
C +CG +T LWR +PV CNACG ++ G +N PL R +G +T
Sbjct: 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDET 57
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 68 SAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+AA G+ C +CG+ T WR G + +CNACG+ YK
Sbjct: 187 AAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK 226
>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
NTL1 protein, curled-leaved tobacco, PIR2:S46419
Length = 238
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 75 QCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+CC++CG + T WR G + +CNACG+ +K
Sbjct: 164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFK 196
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C NC + +T LWR G + +CNACG+ +K
Sbjct: 77 CANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C++CG+ NT WR G + +CNACG+ +K
Sbjct: 182 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFK 212
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 37.1 bits (82), Expect = 0.013
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C NC + +T LWR G + +CNACG+ +K
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFK 184
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 64 GIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
G+ S RR C +C + +T LWR G + +CNACG+ +K
Sbjct: 84 GVAHSLPRR----CASCDTTSTPLWRNGPKGPKSLCNACGIRFK 123
>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 77 CTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLAMRKD 119
CT+CG S+ T + RR G +CNACGL++ G R L+ + +
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTE 259
>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 77 CTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLAMRKD 119
CT+CG S+ T + RR G +CNACGL++ G R L+ + +
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTE 259
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C S T WR G + +CNACG+ YK
Sbjct: 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 190
>At5g66320.2 68418.m08362 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C++CG + T WR G + +CNACG+ YK
Sbjct: 251 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At5g66320.1 68418.m08361 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C++CG + T WR G + +CNACG+ YK
Sbjct: 251 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 35.5 bits (78), Expect = 0.040
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 75 QCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
+CC+ C + T +WR G + +CNACG+ ++
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHR 58
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 64 GIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
G Q+ + + C +CG + T WR G + +CNACG+ YK
Sbjct: 210 GQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYK 253
>At3g20750.1 68416.m02625 zinc finger (GATA type) family protein
Length = 208
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 77 CTN--CGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CTN C + NT +WRR G + +CNACG+ ++
Sbjct: 159 CTNMNCNALNTPMWRRGPLGPKSLCNACGIKFR 191
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 74 GQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
G+ C +C + T WR G + +CNACG+ YK
Sbjct: 196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYK 229
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 34.7 bits (76), Expect = 0.070
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C S T WR G + +CNACG+ +K
Sbjct: 181 CTHCASEKTPQWRTGPLGPKTLCNACGVRFK 211
>At5g49300.1 68418.m06101 zinc finger (GATA type) family protein
similar to unknown protein (gb|AAF63824.1)
Length = 139
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C +CG+ T LWR G + +CNACG+
Sbjct: 38 CADCGTSKTPLWRGGPVGPKSLCNACGI 65
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 77 CTNCGS--RNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLA 115
C +CG+ ++T + RR DG +CNACGL + G R L+
Sbjct: 217 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS 258
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 77 CTNCGS--RNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLA 115
C +CG+ ++T + RR DG +CNACGL + G R L+
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS 260
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C + T WR +G + +CNACG+ ++
Sbjct: 217 CTHCETTTTPQWREGPNGRKTLCNACGIRFR 247
>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 303
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 59 RTVQCGIPQSAARRHGQCCTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
RTV + S + + CT+C + T WR G + +CNACG+ ++
Sbjct: 204 RTVSSTLEASNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C + T WR+ G + +CNACG+ +K
Sbjct: 220 CTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
CT+C + T WR+ G + +CNACG+ +K
Sbjct: 220 CTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C +CG+ T LWR G + +CNACG+
Sbjct: 44 CVDCGTIRTPLWRGGPAGPKSLCNACGI 71
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C++C + T LWR G + +CNACG+
Sbjct: 232 CSDCNTTKTPLWRSGPRGPKSLCNACGI 259
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C++C + T LWR G + +CNACG+
Sbjct: 201 CSDCNTTKTPLWRSGPRGPKSLCNACGI 228
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGL 103
C CG+ T LWR G + +CNACG+
Sbjct: 43 CAICGTSKTPLWRGGPAGPKSLCNACGI 70
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C +C + T WR G + +CNACG+ YK
Sbjct: 221 CLHCATDKTPQWRTGPMGPKTLCNACGVRYK 251
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 65 IPQSAARRHGQCCTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLA 115
I S A+ C +CG ++T + RR G +CNACGL + G R L+
Sbjct: 211 IESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS 264
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 65 IPQSAARRHGQCCTNCG--SRNTTLWRRNNDG-EPVCNACGLYYKLHGINRPLA 115
I S A+ C +CG ++T + RR G +CNACGL + G R L+
Sbjct: 211 IESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS 264
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C +C T WR G + +CNACG+ YK
Sbjct: 231 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 77 CTNCGSRNTTLWRRNNDG-EPVCNACGLYYK 106
C +C T WR G + +CNACG+ YK
Sbjct: 231 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 75 QCCTNCGSRNTTLWRRNNDGEPVCNAC 101
+C T + NT L RN D +P+C C
Sbjct: 52 RCVTGALATNTRLRSRNIDADPICQRC 78
>At5g64160.1 68418.m08056 expressed protein
Length = 227
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 61 VQCGIPQSAARRHGQCCTNCGSR 83
VQCG+P++ G C CG R
Sbjct: 160 VQCGVPKTYTSARGMVCPICGDR 182
>At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /
general transcription factor TFIIB-2 (TFIIB2) identical
to SP|Q9SS44 Transcription initiation factor IIB-2
(General transcription factor TFIIB-2) (AtTFIIB2)
{Arabidopsis thaliana}
Length = 312
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGIN 111
C++C R+T + ++ G+ VC+ CGL + H I+
Sbjct: 6 CSDC-KRHTEVVFDHSAGDTVCSECGLVLESHSID 39
>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
general transcription factor TFIIB-1 (TFIIB1) identical
to transcription initiation factor IIB-1 (TFIIB1)
SP:P48512 from [Arabidopsis thaliana]
Length = 312
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 77 CTNCGSRNTTLWRRNNDGEPVCNACGLYYKLHGIN 111
CT+C + T L ++ G+ +C+ CGL + H I+
Sbjct: 6 CTDC-KKETELVVDHSAGDTLCSECGLVLESHSID 39
>At3g52240.1 68416.m05741 expressed protein
Length = 680
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 57 AYRTVQCGIPQSAARRHGQCCTNCGSRN 84
++ T+ G P ++ +CC +CGSR+
Sbjct: 316 SFETLSHGSPDNSVTSPDKCCNSCGSRS 343
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.133 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,057
Number of Sequences: 28952
Number of extensions: 103720
Number of successful extensions: 260
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 40
length of query: 281
length of database: 12,070,560
effective HSP length: 80
effective length of query: 201
effective length of database: 9,754,400
effective search space: 1960634400
effective search space used: 1960634400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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