GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002158-TA|BGIBMGA002158-PA|undefined
         (112 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   2.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.2  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 13  DGIQTRKRKPKSMGGAHGGVARPPG 37
           D I  RK KPK++    GGV    G
Sbjct: 146 DPINIRKCKPKTVVPEVGGVEEAKG 170


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
          nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 7  PLSMKKDGIQTRKRKPK--------SMGGAHGGVARPPGGSLSVEAHKVLPP 50
          PL MK D     +  P+        SMGG HG +  P G + +  +    PP
Sbjct: 25 PLDMKPDASTLGQFSPQGPNSPVSFSMGG-HGSLLSPSGNTPNKSSTSPYPP 75


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 26  GGAHGGVARPPGGSLS 41
           GG+  G  +PPGG  S
Sbjct: 527 GGSGSGNNQPPGGPSS 542


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,062
Number of Sequences: 317
Number of extensions: 628
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 114,650
effective HSP length: 49
effective length of query: 63
effective length of database: 99,117
effective search space:  6244371
effective search space used:  6244371
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)