GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002158-TA|BGIBMGA002158-PA|undefined
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    28   0.31 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   1.6  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    24   5.0  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.31
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 5   NRPLSMKKDGIQTRKRKPKSMGGAHG 30
           NRP+ +KK+ I TR+R+ K  GG  G
Sbjct: 453 NRPIGLKKNKI-TRRRRGKGPGGEDG 477


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 4   VNRPLSMKKDGIQTRKR------KPKSMGGAHGGVARPPGGSLSVEA 44
           V RPLS+K D I+ R R       PK  GG  G   +    S S ++
Sbjct: 668 VVRPLSLKTDVIKKRNRGVGTSATPKQSGGRKGSTRKSSSKSSSAKS 714


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 78  IALCMTFGRCGRRVTIVQRRGAYCSTP 104
           IALC  FG C   +    R   +C TP
Sbjct: 367 IALC-DFGLCKLNMAKTDRTNTFCGTP 392


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,396
Number of Sequences: 5004
Number of extensions: 9624
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)