GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002158-TA|BGIBMGA002158-PA|undefined
         (112 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186     30   0.36 
06_03_0335 + 19662933-19663334,19663358-19664023                       28   1.5  
11_01_0314 + 2339241-2339728,2342720-2343608                           27   4.5  
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    26   7.8  
05_07_0366 + 29691093-29691590                                         26   7.8  

>05_06_0121 -
          25762247-25762876,25762961-25763134,25763899-25764186
          Length = 363

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 8  LSMKKDGIQTRKRKPKSMGGAHGGVARPP 36
          L+ KK+G    +++  + GGA+GGVA PP
Sbjct: 8  LTGKKEGGDRDRKEHSAAGGANGGVAPPP 36


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)

Query: 26  GGAHGGVARPPG--GSLSVE 43
           G AHGGVARP G  G+ S+E
Sbjct: 187 GAAHGGVARPGGHPGTFSIE 206


>11_01_0314 + 2339241-2339728,2342720-2343608
          Length = 458

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 19  KRKPKSMGGAHGGVARPPGG 38
           ++KP S GG +GG + P GG
Sbjct: 270 RKKPSSGGGGNGGSSFPSGG 289


>08_02_0665 +
          19818500-19819013,19819169-19819260,19819435-19820056,
          19820575-19820775,19821327-19821395,19821428-19821522,
          19821608-19822153
          Length = 712

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 6  RPLSMKKDGIQTRKRKPKSMGGAHGGVARPPGGSLSVEAHKVLPP 50
          RP  + ++GI+  +R+   + GA  GV +  GG  +VE     PP
Sbjct: 23 RPPGLPRNGIRRGERRWHGIRGAEKGV-KEDGGGEAVEGSGGPPP 66


>05_07_0366 + 29691093-29691590
          Length = 165

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 19  KRKPKSMGGAHGGVARPPGGSLSVEAHKVLPPLY 52
           +R+P   G   GG  R  GG+ +V     LP ++
Sbjct: 82  RRRPAHRGRGRGGRRRNSGGNATVAGGDALPEVF 115


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,117
Number of Sequences: 37544
Number of extensions: 106346
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)