GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002158-TA|BGIBMGA002158-PA|undefined
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    40   6e-04
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      27   4.6  
SB_44987| Best HMM Match : VWA (HMM E-Value=0.88)                      26   6.1  

>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/21 (85%), Positives = 18/21 (85%)

Query: 4   VNRPLSMKKDGIQTRKRKPKS 24
           VNRPLSMKKDGIQTR RK  S
Sbjct: 445 VNRPLSMKKDGIQTRNRKVSS 465


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 3    QVNRPLSMKKDGIQTRKRKP----KSMGGAHGGVARPPGGSLSVEAHKVLPP 50
            Q  R    ++ G ++R+ +     KS GGAHG  + PP  +  V+  K   P
Sbjct: 1568 QRGRDKDDRESGAKSRRERQSSARKSKGGAHGATSPPPTVAPQVDEDKTDGP 1619


>SB_44987| Best HMM Match : VWA (HMM E-Value=0.88)
          Length = 133

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 80  LCMTFGRCGRRVTIVQRRGAYCSTPYKCKMNY 111
           +C+  GRC +RV    +RG  C    +C+  Y
Sbjct: 104 ICLVVGRCKKRVA---KRGVPCFLNGRCEKGY 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,684
Number of Sequences: 59808
Number of extensions: 94713
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 16,821,457
effective HSP length: 73
effective length of query: 39
effective length of database: 12,455,473
effective search space: 485763447
effective search space used: 485763447
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)