GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002158-TA|BGIBMGA002158-PA|undefined
         (112 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    36   0.007
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    36   0.007
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        36   0.007
Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical pr...    31   0.14 
U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor pro...    31   0.14 
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    31   0.19 
Z69663-3|CAA93510.2|  226|Caenorhabditis elegans Hypothetical pr...    31   0.25 
AF146517-1|AAD33964.1|  226|Caenorhabditis elegans GATA transcri...    31   0.25 
Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    26   5.3  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    26   5.3  
U13876-6|AAA21175.2|  444|Caenorhabditis elegans Hypothetical pr...    26   5.3  
Z68337-7|CAA92742.1|  220|Caenorhabditis elegans Hypothetical pr...    25   9.3  
AL110485-11|CAE18011.1|  100|Caenorhabditis elegans Hypothetical...    25   9.3  

>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 3   QVNRPLSMKKDGIQTRKRKPKSMG 26
           +V RP++MKKDGIQTR RK  + G
Sbjct: 304 KVERPITMKKDGIQTRNRKLSAKG 327


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 3   QVNRPLSMKKDGIQTRKRKPKSMG 26
           +V RP++MKKDGIQTR RK  + G
Sbjct: 376 KVERPITMKKDGIQTRNRKLSAKG 399


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 3   QVNRPLSMKKDGIQTRKRKPKSMG 26
           +V RP++MKKDGIQTR RK  + G
Sbjct: 304 KVERPITMKKDGIQTRNRKLSAKG 327


>Z49867-3|CAA90029.2|  433|Caenorhabditis elegans Hypothetical
           protein C33D3.1 protein.
          Length = 433

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 1/22 (4%)

Query: 4   VNRPLSMKKDG-IQTRKRKPKS 24
           + RP SMKK+G +QTRKRK KS
Sbjct: 270 IPRPTSMKKEGALQTRKRKSKS 291


>U25175-1|AAC36130.1|  433|Caenorhabditis elegans GATA-factor
           protein.
          Length = 433

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 1/22 (4%)

Query: 4   VNRPLSMKKDG-IQTRKRKPKS 24
           + RP SMKK+G +QTRKRK KS
Sbjct: 270 IPRPTSMKKEGALQTRKRKSKS 291


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 14   GIQTRKRKPKSMGGAHGGVARPPGGSLSVEAHKVLPP 50
            G  T +R P++  GA  G   PPGG         LPP
Sbjct: 1126 GAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALPP 1162


>Z69663-3|CAA93510.2|  226|Caenorhabditis elegans Hypothetical
           protein K02B9.4 protein.
          Length = 226

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/19 (57%), Positives = 16/19 (84%)

Query: 6   RPLSMKKDGIQTRKRKPKS 24
           RPLS++KDGI  R R+P++
Sbjct: 188 RPLSLRKDGIMKRNRRPRN 206


>AF146517-1|AAD33964.1|  226|Caenorhabditis elegans GATA
           transcription factor ELT-3 protein.
          Length = 226

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 11/19 (57%), Positives = 16/19 (84%)

Query: 6   RPLSMKKDGIQTRKRKPKS 24
           RPLS++KDGI  R R+P++
Sbjct: 188 RPLSLRKDGIMKRNRRPRN 206


>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 23  KSMGGAHGGVARPPGGSLSVEAHKVLPP 50
           +S+   H  + + P G + V+ HKV+PP
Sbjct: 358 QSLNIVHQCLNKMPAGEIKVDDHKVVPP 385


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 7   PLSMKKDGIQTRKRKPKSMGGAHGGVARPPGGSLSVEAHKVLPP 50
           P   K+D  ++R +  +   G    ++ P  G +++  H V+PP
Sbjct: 466 PRRRKEDDRRSRHQDSQEASGGSQEMSFPLSGGITIPQHIVIPP 509


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 7   PLSMKKDGIQTRKRKPKSMGGAHGGVARPPGGSLSVEAHKVLPP 50
           P   K+D  ++R +  +   G    ++ P  G +++  H V+PP
Sbjct: 460 PRRRKEDDRRSRHQDSQEASGGSQEMSFPLSGGITIPQHIVIPP 503


>U13876-6|AAA21175.2|  444|Caenorhabditis elegans Hypothetical
           protein F57B9.8 protein.
          Length = 444

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 6   RPLSMKKDGIQTRKRKPKSMGGAHGGVARPPGGSLSVEAHKVLPP 50
           R  + KK G +  K+KP S     GG + P  G LS +  ++  P
Sbjct: 401 RDKTAKKTG-RRNKKKPSSASNGPGGNSGPSSGPLSGKDSRLKKP 444


>Z68337-7|CAA92742.1|  220|Caenorhabditis elegans Hypothetical
           protein M7.10 protein.
          Length = 220

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 22  PKSMGGAHGGVARPPGGSLSVEAHK 46
           PK  GG HG   +PPGG   V   K
Sbjct: 186 PKGPGGPHG---KPPGGPKKVSEEK 207


>AL110485-11|CAE18011.1|  100|Caenorhabditis elegans Hypothetical
          protein Y46G5A.34 protein.
          Length = 100

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 8  LSMKKDGIQTRKRKPKSMGGAHGGVARPPGGSLS 41
          +S KK+  +  K KP+++ G  GG    PGG+ S
Sbjct: 17 VSCKKEKNEAAKLKPRNLDGKPGGPT--PGGAKS 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.137    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,093
Number of Sequences: 27539
Number of extensions: 67093
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 16
length of query: 112
length of database: 12,573,161
effective HSP length: 72
effective length of query: 40
effective length of database: 10,590,353
effective search space: 423614120
effective search space used: 423614120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)