GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
         (595 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       28   0.21 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    28   0.21 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    28   0.21 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   6.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   6.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   6.0  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 108 QLEHEQQMQQYAPKLEESAETRELQQHHYD 137
           Q  H+QQ Q+   K+E+   +  + QHH+D
Sbjct: 82  QERHKQQQQEKQQKIEQQTHS-SIHQHHHD 110


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 108 QLEHEQQMQQYAPKLEESAETRELQQHHYD 137
           Q  H+QQ Q+   K+E+   +  + QHH+D
Sbjct: 233 QERHKQQQQEKQQKIEQQTHS-SIHQHHHD 261


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 108 QLEHEQQMQQYAPKLEESAETRELQQHHYD 137
           Q  H+QQ Q+   K+E+   +  + QHH+D
Sbjct: 292 QERHKQQQQEKQQKIEQQTHS-SIHQHHHD 320


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 428 SGYEGGLLVEGYPAPTQAWPAHNLL 452
           S +  G LV G PAPT +   H+L+
Sbjct: 239 STHHQGQLVVGLPAPTSSIMMHHLV 263


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 393 NSQQVTLYTHGNTVQYKVGGEHYLGQSGGVEYVPVS--GYEGG 433
           N Q       G    Y   G HY G  G V ++P +  G+E G
Sbjct: 373 NHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEPG 415


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 436 VEGYPAPTQAWPAHNLLPID 455
           V+GYPA  Q  P H   P D
Sbjct: 21  VQGYPASVQPLPRHFNPPSD 40


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 393 NSQQVTLYTHGNTVQYKVGGEHYLGQSGGVEYVPVS--GYEGG 433
           N Q       G    Y   G HY G  G V ++P +  G+E G
Sbjct: 321 NHQNYVQGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEPG 363


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,148
Number of Sequences: 317
Number of extensions: 4814
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 595
length of database: 114,650
effective HSP length: 61
effective length of query: 534
effective length of database: 95,313
effective search space: 50897142
effective search space used: 50897142
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)