GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    75   3e-14
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    67   6e-12
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    60   9e-10
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    29   2.4  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    27   5.6  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    27   5.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   7.4  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   7.4  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 471 CVNCAAATTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGNRRMG 529
           C NC    TPLWRR     ++LCNACGLY +  GV RP L  +     +AL +       
Sbjct: 365 CFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRP-LSPRNKGSSKALEN------- 416

Query: 530 VTCANCXXXXXXXXXXXXXGEPVCNACGLYFKLH 563
           + CANC             G+ VCNACGLY +LH
Sbjct: 417 LVCANCSSTKTSLWRKDRHGQTVCNACGLYARLH 450



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 21/37 (56%), Positives = 27/37 (72%)

Query: 471 CVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRP 507
           C NC++  T LWR+D  G  +CNACGLY R++G NRP
Sbjct: 419 CANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRP 455


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 471 CVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRP-PLKGQKAKPQQALPSNGN 525
           C NCA   TPLWRRD +G+ +CNACGLY +I+GV+RP  +K    K ++ L  NGN
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKKAIIKRRKRLVFNGN 227



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/39 (48%), Positives = 21/39 (53%)

Query: 469 KECVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRP 507
           + C NC   TT LWRR      LCNACGLY +     RP
Sbjct: 10  QSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARP 48



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 532 CANCXXXXXXXXXXXXXGEPVCNACGLYFKLHNV 565
           C NC             G P+CNACGLY+K+H V
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNACGLYYKIHGV 205



 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 529 GVTCANCXXXXXXXXXXXXXGEPVCNACGLYFK 561
           G +C+NC                +CNACGLY K
Sbjct: 9   GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQK 41


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 24/37 (64%), Positives = 26/37 (70%)

Query: 471 CVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRP 507
           C NC   TTPLWRR   G  LCNACGL+ +INGV RP
Sbjct: 635 CTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRP 671



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 531 TCANCXXXXXXXXXXXXXGEPVCNACGLYFKLHNV 565
           TC NC             G+P+CNACGL+ K++ V
Sbjct: 634 TCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGV 668


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 471 CVNCAAATTPLWRRDGTGHY---LCNACGLYTRINGVNRP 507
           C NC    T  WR     +    LCNACG+Y       RP
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRP 390


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 461 SMAGMGEVKECVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVN 505
           S+    + K C +C A   P W     G YLC  C    R  GV+
Sbjct: 14  SLRSQRDNKVCFDCGAKN-PTWSSTTFGIYLCLDCSAAHRNMGVH 57


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 377 SVVPQSQTVYEAPPSPNSQQVTLYTHGNTVQYKVGGEHYLGQSGGVEYVP 426
           SVVP++  + E PP   S    + T G T  Y   G     Q G  +Y P
Sbjct: 289 SVVPRTDVINE-PPRRYSHANGVTTSGTTHSYTSTGSKRYSQMGTEDYQP 337


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 562 LHNVRHHCAHQPHLTNTELLMNEERSDSVQSAER 595
           L+ V+ H A QP    T LL  E+++D     +R
Sbjct: 650 LNRVKFHSATQPFSQTTSLLFKEQKTDGSFRGQR 683


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 374 VYGSVVPQSQTVYEAPPSPNSQQVTL 399
           V G+V+P+S TV+E PPS N     L
Sbjct: 353 VTGTVIPKSSTVHE-PPSSNDSHPLL 377


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,738
Number of Sequences: 5004
Number of extensions: 85278
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 15
length of query: 595
length of database: 2,362,478
effective HSP length: 77
effective length of query: 518
effective length of database: 1,977,170
effective search space: 1024174060
effective search space used: 1024174060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)