Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 43 6e-04
12_01_0442 + 3495333-3496484 42 0.001
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 42 0.001
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 42 0.001
01_06_0683 - 31173763-31174635,31175146-31175436 42 0.002
03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622 40 0.004
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 40 0.007
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 39 0.013
03_01_0217 - 1712979-1713794 38 0.017
01_06_0154 - 27049218-27049517,27049679-27050107 38 0.017
05_07_0153 - 28051496-28051801,28051933-28052271 38 0.023
10_08_0898 + 21424379-21424792,21424974-21425723 36 0.069
11_01_0560 - 4413174-4414469 36 0.12
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941... 36 0.12
02_05_1145 + 34429060-34429401,34430053-34430967 36 0.12
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 35 0.16
05_06_0110 + 25632514-25632834,25633200-25634039 35 0.16
12_02_1180 + 26727171-26727239,26728782-26729642 34 0.37
03_01_0316 + 2487917-2488003,2488104-2488676 34 0.37
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 33 0.64
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 33 0.85
01_06_0307 - 28361538-28361606,28361684-28361854,28361963-283620... 33 0.85
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 32 1.1
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 31 2.6
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 31 2.6
03_01_0576 + 4255153-4255238,4256051-4256153,4256235-4256556,425... 31 2.6
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 31 3.4
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520... 30 4.5
05_07_0238 + 28597399-28598286 30 4.5
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 30 4.5
09_06_0130 + 21035349-21035484,21036010-21036128,21036364-210364... 30 6.0
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361... 30 6.0
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 29 7.9
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704... 29 7.9
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 29 7.9
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 43.2 bits (97), Expect = 6e-04
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
+ CV C A TTP+WR TG LCNACG+ R
Sbjct: 668 RSCVECRATTTPMWRSGPTGPRSLCNACGIRYR 700
>12_01_0442 + 3495333-3496484
Length = 383
Score = 42.3 bits (95), Expect = 0.001
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 453 PIDDGFDPS-MAGMGEVKECVNCAAATTPLWRRDGTGH-YLCNACGLYTRINGVNRPPLK 510
P+D G + + + C+NC A TP WR G LCNACG+ R G + P +
Sbjct: 101 PVDPGEEEAGKRAAKRARRCLNCDAVETPQWRSGPMGRSTLCNACGVRLRAVG-SLPEHR 159
Query: 511 GQKAKPQQALPSN 523
A+ A P++
Sbjct: 160 APAARTTTAAPAS 172
Score = 38.7 bits (86), Expect = 0.013
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 469 KECVNCAAATTPLWRRDGTGH-YLCNACGLYTR 500
+ CV+C + TP WR TG LCNACG+ R
Sbjct: 246 RSCVHCGSTETPQWREGPTGRGTLCNACGVRYR 278
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 42.3 bits (95), Expect = 0.001
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 471 CVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
CV C A TTP+WR TG LCNACG+ R
Sbjct: 27 CVECGATTTPMWRGGPTGPRSLCNACGIRYR 57
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 41.9 bits (94), Expect = 0.001
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 426 PVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDGFDPSMA-GMGEVKECVNCAAATTPLWRR 484
P SG GG P + PA D G +M G ++ C +C TPLWR
Sbjct: 144 PSSGVTGGAATTVAPKKPRRRPAQAYE--DHGHGGAMGQAFGVIRVCSDCNTTKTPLWRS 201
Query: 485 DGTG-HYLCNACGLYTR 500
G LCNACG+ R
Sbjct: 202 GPCGPKSLCNACGIRQR 218
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 41.5 bits (93), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 440 PAPTQAWPAHNLLPIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
PAP A + +P+ G A GE + C++C TP WR G LCNACG+
Sbjct: 234 PAPP-AQAQLSSVPVHSGGSAPAAAAGEGRRCLHCETDKTPQWRTGPMGPKTLCNACGV 291
>03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622
Length = 136
Score = 40.3 bits (90), Expect = 0.004
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
GE K C +C TPLWR +G LCNACG+ R
Sbjct: 22 GEPKACTDCHTTKTPLWRGGPSGPKSLCNACGIRYR 57
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 39.5 bits (88), Expect = 0.007
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 470 ECVNC--AAATTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGN 525
EC +C +AA+TP+ RR G LCNACGL G R KG P Q +P+ N
Sbjct: 235 ECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPV-PLQIVPAATN 292
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 38.7 bits (86), Expect = 0.013
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 455 DDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
D+ +G V+ C +C TPLWR G LCNACG+ R
Sbjct: 162 DESQQQLQQALGVVRVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQR 208
>03_01_0217 - 1712979-1713794
Length = 271
Score = 38.3 bits (85), Expect = 0.017
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTRIN 502
GE K C +C TP WR G LCNACG+ RI+
Sbjct: 183 GEEKRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRID 220
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 38.3 bits (85), Expect = 0.017
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C NC +TPLWR G LCNACG+
Sbjct: 122 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 151
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 37.9 bits (84), Expect = 0.023
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C NC +TPLWR G LCNACG+
Sbjct: 92 RRCANCDTMSTPLWRNGPRGPKSLCNACGI 121
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 36.3 bits (80), Expect = 0.069
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 468 VKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
V+ C +CA+ TP WR G LCNACG+
Sbjct: 275 VRRCTHCASEKTPQWRTGPLGPKTLCNACGV 305
>11_01_0560 - 4413174-4414469
Length = 431
Score = 35.5 bits (78), Expect = 0.12
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 469 KECVNCAAATTPLWRR--DGTGHYLCNACGLYTRIN 502
+ C +C + TP WR DG G LCNACG+ ++++
Sbjct: 361 RRCSHCGTSETPQWRMGPDGPG-TLCNACGIRSKMD 395
>03_05_1042 -
29893649-29893721,29893960-29894033,29894111-29894179,
29894333-29894438,29894548-29894664,29895412-29895527,
29895612-29895698,29897281-29897309,29897914-29898169
Length = 308
Score = 35.5 bits (78), Expect = 0.12
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 471 CVNCAAAT--TPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQ 517
C NC ++ TP RR G LCNACGL G R PL K Q
Sbjct: 203 CQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQ 252
>02_05_1145 + 34429060-34429401,34430053-34430967
Length = 418
Score = 35.5 bits (78), Expect = 0.12
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
G V+ C +C TP WR G LCNACG+
Sbjct: 330 GTVRRCTHCQIEKTPQWRAGPLGPKTLCNACGV 362
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 35.1 bits (77), Expect = 0.16
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 470 ECVNCAAATTPLWRRDGTGH-YLCNACGLYTRINGV--NRPPLKGQKAKPQQALPSNGNR 526
+C +C TP WR GH LCNAC + R + PL+ P+ L SN +
Sbjct: 602 QCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYRPLRSPTFSPE--LHSNRHH 659
Query: 527 RM 528
R+
Sbjct: 660 RV 661
Score = 34.3 bits (75), Expect = 0.28
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 469 KECVNCAAATTPLWR-RDGTGHYLCNACGLYTRINGVNRPPL----KGQKAKPQQALPSN 523
+EC +C TP WR + LCNACG R +N + QK K + + S
Sbjct: 773 RECAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQLNSTTFSQNSQEQKKKSKSSACSR 832
Query: 524 GNRRMGV 530
+R V
Sbjct: 833 ERKRSAV 839
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 469 KECVNCAAATTPLWRR--DGTGHYLCNACG 496
+ C +C TP W D G LCNACG
Sbjct: 991 RRCTHCGTTKTPAWLSGPDSRGK-LCNACG 1019
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 35.1 bits (77), Expect = 0.16
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 427 VSGYEGGLLVEGYPAPTQAWPAHNLLPIDDGFDPSMAGMG--EVKECVNCAAATTPLWRR 484
+S E G +PA A A P+ A E + C++C TP WR
Sbjct: 209 ISPSESGTAAPAFPAKKAAKSAKKKDGPSPAPAPNAAAQAAAEGRRCLHCETDKTPQWRT 268
Query: 485 DGTG-HYLCNACGL 497
G LCNACG+
Sbjct: 269 GPMGPKTLCNACGV 282
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 33.9 bits (74), Expect = 0.37
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 468 VKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+K C +C + TP WR G LCNACG+
Sbjct: 236 MKRCTHCLSYKTPQWRTGPLGPKTLCNACGV 266
>03_01_0316 + 2487917-2488003,2488104-2488676
Length = 219
Score = 33.9 bits (74), Expect = 0.37
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C +CA TP WR G LCNACG+
Sbjct: 122 RRCTHCAVDETPQWRLGPDGPRTLCNACGV 151
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 33.1 bits (72), Expect = 0.64
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 202 SQEGEGEDPAHEAFLSHKDKNELQAYAA-TSEAGPV--DGRQYAAVLGEQVAASTALEMI 258
S+E + E+P EA K E +A AA EA P + + V+ E+ AA+ +E I
Sbjct: 176 SEEAKTEEPKAEAAADEPAKEESKAEAAPAEEAKPAEPEPEEKTVVVTEEEAATKTVEAI 235
Query: 259 QTTSLNNQQSVGVAYQQVKYETRGEPEPRPTTYASLQPV 297
+ T + A E PEP A+ +PV
Sbjct: 236 EETVV----PAAAAPAAAATEEAAAPEPEVQAAAAPEPV 270
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 32.7 bits (71), Expect = 0.85
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 451 LLPIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
L P G S G+ + C +C TP WR G LCNACG+
Sbjct: 325 LPPHPSGAAASAPAPGD-RRCSHCGVQKTPQWRAGPEGAKTLCNACGV 371
Score = 29.5 bits (63), Expect = 7.9
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 502 NGVNRPPLKGQKAK-----PQQA---LPSNGNRRMGVTCANCXXXXXXXXXXXXXG-EPV 552
NG N+P +G+K K P A P+ G+RR C++C G + +
Sbjct: 310 NGKNKPKKRGRKPKQLPPHPSGAAASAPAPGDRR----CSHCGVQKTPQWRAGPEGAKTL 365
Query: 553 CNACGLYFK 561
CNACG+ +K
Sbjct: 366 CNACGVRYK 374
>01_06_0307 -
28361538-28361606,28361684-28361854,28361963-28362027,
28362467-28362565,28363005-28363099,28363199-28363413,
28364394-28364735,28365505-28365645,28365774-28365945,
28366073-28366176,28366799-28366911,28367158-28367222,
28367564-28367691
Length = 592
Score = 32.7 bits (71), Expect = 0.85
Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 7/160 (4%)
Query: 116 QQYAPKLEESAETRELQQHHYDXXXXXXXXXXXXXXXXFKQEPYRSMQSPIPVDKRLPVQ 175
Q+Y + + S EL + + D + P S+ +P PV+
Sbjct: 218 QEYGLEWDSSNTEAELNKKYEDLLDGSGSSARQGQLPIIENSPVASISRDMPSLSISPVE 277
Query: 176 ----YTRAPQRPAYGRGLALRYGAPHHVIVSQEGEGEDPAHEAFLSHKDKNEL--QAYAA 229
Y APQ P+ G A+ + A +VSQE PA E + +++ +A AA
Sbjct: 278 DTGKYQAAPQSPSSPAGSAVMHAATKSNMVSQE-HHRSPADEISCATPSSSDVLEKARAA 336
Query: 230 TSEAGPVDGRQYAAVLGEQVAASTALEMIQTTSLNNQQSV 269
+ A AA +V + A +Q Q V
Sbjct: 337 IAAANRASAAARAAADLVKVEGAEAPVQVQGEGEGGPQGV 376
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 32.3 bits (70), Expect = 1.1
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 442 PTQAWPAHNLLPIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
P P H L G ++ G+ + C +C TP WR G LCNACG+
Sbjct: 280 PKHQQPPH--LAAAAGGGAALPATGD-RRCSHCGVQKTPQWRAGPEGAKTLCNACGV 333
Score = 31.5 bits (68), Expect = 2.0
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 502 NGVNRPPLKGQKAKPQQ------------ALPSNGNRRMGVTCANCXXXXXXXXXXXXXG 549
NG +P +G+K K QQ ALP+ G+RR C++C G
Sbjct: 268 NGKQKPKKRGRKPKHQQPPHLAAAAGGGAALPATGDRR----CSHCGVQKTPQWRAGPEG 323
Query: 550 -EPVCNACGLYFK 561
+ +CNACG+ +K
Sbjct: 324 AKTLCNACGVRYK 336
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 31.1 bits (67), Expect = 2.6
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 389 PPSPNSQQVTLYTHGNTVQYKVGGEHYLGQSGGVE---YVPVSGYEGGLLVEGYPAPTQA 445
P +PN Q T Y G Y+ G Y G + G + P S Y+G GY
Sbjct: 286 PHAPNPQGYTNYQQGGAPGYQGGPPGYQGSNQGYQGPPPPPPSAYQGN--NPGYQGGGPG 343
Query: 446 WPAHNLLPI---DDGFDPSMAGMG---EVKECVNCAAATTPLWRRDGTG 488
+ N P + G+ P G G ++ + A P + RDG G
Sbjct: 344 YQGGNPPPYQGGNPGYAPGYHGQGGNPSYQQGGDNYNAGVPAYERDGQG 392
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 31.1 bits (67), Expect = 2.6
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 217 SHKDKNELQAYAATSEAGPVDGRQYAAVLGEQVAASTALEMIQTTSLNNQQSVGVAYQQV 276
+++ +N A A + P YAA +QV + M Q S +Q G A Q
Sbjct: 504 TYQMQNPPVASVAPTNTYPAPSSPYAAPPRQQVPSPATKPMQQYNSFVSQTRSGPAMAQ- 562
Query: 277 KYETRGEPEPRPTTYASLQP 296
G P P TT A+ +P
Sbjct: 563 DVRMNGNPRPSETTAAAAKP 582
>03_01_0576 +
4255153-4255238,4256051-4256153,4256235-4256556,
4257451-4257823,4257857-4258103,4258189-4258248,
4258767-4258836,4259299-4259357,4259855-4259944
Length = 469
Score = 31.1 bits (67), Expect = 2.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 456 DGFDPSMAGMGEVKECVNC--AAATTPLWRRDGTGHY-LCNACGL 497
+G D + E+ C+ C +A TP RR G LCNACG+
Sbjct: 15 EGEDGGRVTVDELTRCLRCGISANATPHMRRGPEGRRTLCNACGI 59
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 30.7 bits (66), Expect = 3.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 386 YEAPPSPNSQQVTLYTHGNTVQYKVGGE 413
YEAP PN V Y H ++ K GGE
Sbjct: 168 YEAPKEPNGSYVVHYNHYDSSNGKAGGE 195
>06_03_1267 -
28851286-28851306,28851452-28851520,28852031-28852066,
28852381-28852486,28852869-28852997,28853685-28853797,
28853907-28853993,28854106-28854543
Length = 332
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 470 ECVNCA--AATTPLWRRDGTG-HYLCNACGL 497
EC +C A TP+ RR G LCNACGL
Sbjct: 256 ECHHCGINAKATPMMRRGPDGPRTLCNACGL 286
>05_07_0238 + 28597399-28598286
Length = 295
Score = 30.3 bits (65), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 469 KECVNCAAATTPLWRRDGTG 488
+ C NC A+TPLWR G
Sbjct: 128 RRCANCGTASTPLWRNGPRG 147
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 30.3 bits (65), Expect = 4.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 103 PPEHSQLEHEQQMQQYAPKLEESAETRELQQHHY 136
PP Q H QQ Q AP ++ + R+ QQHH+
Sbjct: 26 PPLQQQHNHHQQQQTSAPHHQQYVQ-RQPQQHHH 58
>09_06_0130 +
21035349-21035484,21036010-21036128,21036364-21036421,
21036522-21036599,21036705-21036898
Length = 194
Score = 29.9 bits (64), Expect = 6.0
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 166 IPVDKRLPVQYTRAPQRPAYGRGLALRYGAPHHVIVSQEGEGED-PAHEAFLS----HKD 220
+PV R P Q A LA +YGA V+V + E+ P H+ +S H
Sbjct: 70 LPVTDRNPYLSEGTRQAAATSASLAKKYGANITVVVIDDKPKEEFPEHDTQMSSIRWHLS 129
Query: 221 KNELQAYAATSEAGPVDGRQYAAVLGEQVAASTALEMI 258
+ + G +G++ A++GE VA L+++
Sbjct: 130 EGGFTEFGLMERLG--EGKKPTAIIGE-VADELELDLV 164
>09_02_0052 -
3616013-3616033,3616116-3616514,3617925-3618094,
3619691-3620732
Length = 543
Score = 29.9 bits (64), Expect = 6.0
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 179 APQRPAYGRGLALRYGAP--HH-VIVSQEGEGEDPAHEAFLSHKDKNELQAYAATS 231
APQR +Y YGA HH ++S G PAH + + + + Q Y +TS
Sbjct: 488 APQRHSYPYERQYVYGAEAHHHPTMISSAPYGMSPAHTTYYGNGYQVQYQLYQSTS 543
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 29.5 bits (63), Expect = 7.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 392 PNSQQVTLYTHGNTVQYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNL 451
P+++ + H N V KV GEH GG +++ + + L+ E PA AW +
Sbjct: 530 PHTKLASYKGHQNWV--KVSGEHLTFPGGGTQFINGAAHYIDLIEEAVPA--VAWGRRSR 585
Query: 452 LPIDDG 457
+ +D G
Sbjct: 586 VVLDVG 591
>03_05_0713 -
27070063-27070126,27070202-27070290,27070369-27070428,
27071110-27071215,27071309-27071428,27072340-27072476,
27072561-27072647,27073660-27073956
Length = 319
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 470 ECVNCAAAT--TPLWRRDGTG-HYLCNACGLYTRINGVNR 506
+C NC + TP RR G LCNACGL G R
Sbjct: 214 KCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLR 253
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 29.5 bits (63), Expect = 7.9
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 190 ALRYGAPHHVIVSQEGEGEDPAHEAFLSHKDKNELQAYAATSEAGPVDGRQYAAVLGEQV 249
A R G H + +E AH + + + +L + P DGR VLGE +
Sbjct: 175 ARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDL----ARVSPGDGRSREEVLGEPL 230
Query: 250 AASTALEMIQT-TSLNNQQSVG 270
A+ ++++ S N Q ++G
Sbjct: 231 TAAEVRDLVKPHISHNRQLNIG 252
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,599
Number of Sequences: 37544
Number of extensions: 669932
Number of successful extensions: 1225
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 58
length of query: 595
length of database: 14,793,348
effective HSP length: 86
effective length of query: 509
effective length of database: 11,564,564
effective search space: 5886363076
effective search space used: 5886363076
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -