Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 53 6e-07
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 44 5e-04
SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095) 36 0.12
SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.21
SB_40445| Best HMM Match : rve (HMM E-Value=0.0008) 33 0.65
SB_27781| Best HMM Match : Ank (HMM E-Value=0) 31 2.0
SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_10026| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.5
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 30 4.6
SB_12815| Best HMM Match : POPLD (HMM E-Value=0.88) 30 4.6
SB_2657| Best HMM Match : POPLD (HMM E-Value=0.88) 30 4.6
SB_13160| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.1
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45) 30 6.1
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 53.2 bits (122), Expect = 6e-07
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 471 CVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRP 507
C NC T LWRR+ G +CNACGLY +++ VNRP
Sbjct: 412 CANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRP 448
Score = 48.0 bits (109), Expect = 2e-05
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 529 GVTCANCXXXXXXXXXXXXXGEPVCNACGLYFKLHNV 565
G +CANC G+PVCNACGLY+KLH V
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAV 445
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 43.6 bits (98), Expect = 5e-04
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 469 KECVNCAAATTPLWRRDGTGHYLCNACGL 497
KEC +C A TPLWR G LCNACG+
Sbjct: 221 KECASCGVAKTPLWRDAEDGTPLCNACGI 249
Score = 33.9 bits (74), Expect = 0.37
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 532 CANCXXXXXXXXXXXXXGEPVCNACGLYFKLHNVR 566
CA+C G P+CNACG+ +K + +R
Sbjct: 223 CASCGVAKTPLWRDAEDGTPLCNACGIRYKKYRIR 257
>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
Length = 225
Score = 35.5 bits (78), Expect = 0.12
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 465 MGEVKECVNCAAATTPLWRRDGTGHYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNG 524
+G+ +C C + +WR+ G LCN C L R+N R + K +
Sbjct: 3 LGQNAQCFACKINESLMWRKGANGEILCNCCHL-KRVNASTRTQRQSSKESRKLVARIKA 61
Query: 525 NRRMG 529
+ R G
Sbjct: 62 SSRKG 66
>SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 34.7 bits (76), Expect = 0.21
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDGFDPSMAGMG 466
++K G H LG + P GY ++ GY +P+H L D+G + AG+G
Sbjct: 11 RWKGGRNHGLGDV--FVFYPGEGYRNVQVIRGYDTAADEYPSHLNLFSDEGEGLTKAGLG 68
Query: 467 EVKECVNCAAAT 478
V V T
Sbjct: 69 RVDHSVEAFVYT 80
>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
Length = 467
Score = 33.1 bits (72), Expect = 0.65
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDGFDPSMAGMG 466
++K G H LG + P GY ++ GY +P+H L D+G + AG+G
Sbjct: 57 RWKGGRNHGLGDV--FVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGEGLTKAGLG 114
Query: 467 EVKECVNCAAAT 478
+ V T
Sbjct: 115 RLDRSVEAFVYT 126
>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
Length = 485
Score = 31.5 bits (68), Expect = 2.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 553 CNACGLYFKLHNVRHHCAH 571
C+ CG+ F + N +HHC H
Sbjct: 429 CHECGMKFSIKNRKHHCRH 447
>SB_56125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 30.7 bits (66), Expect = 3.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 412 GEHYLGQSGG-VEYVPVS-GYEGGLL-VEGYPAPTQAWP 447
G+ G +GG V ++P GY+ G L V+GYP P Q +P
Sbjct: 11 GDEKNGTTGGQVTHLPGDCGYKAGCLKVQGYPPPQQGYP 49
>SB_10026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 30.7 bits (66), Expect = 3.5
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDGFDPSMAGMG 466
++K G H LG + P GY ++ GY +P+H L D+G +G
Sbjct: 292 RWKGGRNHGLGDV--FVFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEG-GTYNSGKQ 348
Query: 467 EVKECVNCAAATTPLWRRD---GTGHYLCNACGLYTRING 503
C A +RD G G Y C+ G + G
Sbjct: 349 PSDPCQRSADQNPYSTQRDSQPGAGKYPCSDAGCHRHSMG 388
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 30.3 bits (65), Expect = 4.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 495 CGLYTRINGVNRPPLKGQKAKPQQALPSNGNR 526
CG YTR N N+ P G QQ +P N R
Sbjct: 2319 CGKYTRCNTCNQDPNCGWCDSAQQCMPGNQTR 2350
>SB_12815| Best HMM Match : POPLD (HMM E-Value=0.88)
Length = 634
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDG 457
++K G H LG + PV GY ++ GY +P+H L D+G
Sbjct: 341 RWKGGRNHGLGDV--FVFYPVEGYRNVHVIRGYDTAADVYPSHLNLFSDEG 389
>SB_2657| Best HMM Match : POPLD (HMM E-Value=0.88)
Length = 634
Score = 30.3 bits (65), Expect = 4.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDG 457
++K G H LG + PV GY ++ GY +P+H L D+G
Sbjct: 341 RWKGGRNHGLGDV--FVFYPVEGYRNVHVIRGYDTAADVYPSHLNLFSDEG 389
>SB_13160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.9 bits (64), Expect = 6.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 407 QYKVGGEHYLGQSGGVEYVPVSGYEGGLLVEGYPAPTQAWPAHNLLPIDDG 457
++K G H LG + PV GY ++ GY +P+H L D+G
Sbjct: 96 RWKGGRNHGLGDV--FVFYPVEGYRNVHVIRGYDTAADEYPSHLNLFSDEG 144
>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
Length = 443
Score = 29.9 bits (64), Expect = 6.1
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 473 NCAAATTPLWRRDGTGHYLCNA 494
NC A +P R D TGHY CNA
Sbjct: 186 NCNVACSP--RNDSTGHYNCNA 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.129 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,949
Number of Sequences: 59808
Number of extensions: 698991
Number of successful extensions: 1496
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 16
length of query: 595
length of database: 16,821,457
effective HSP length: 86
effective length of query: 509
effective length of database: 11,677,969
effective search space: 5944086221
effective search space used: 5944086221
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 63 (29.5 bits)
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