GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
         (595 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   3.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 419 SGGVEYVPVSGYEGGLLVEGYPAPTQAW 446
           +  V +VP+SG+ G  ++E  P+P   W
Sbjct: 185 TASVAFVPISGWHGDNMLE--PSPKTPW 210


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 180 PQRPAYGRGLALRYGAPHHVIVSQEGEGE--DPAHEAFLSHKDKNELQAY 227
           P   AYG GL   YG   H + S + E    +P   A   ++D++    Y
Sbjct: 391 PDVKAYGAGLLSAYGELLHALTSGKCEHRPFEPKSTAVQKYQDQDYQPIY 440


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,695
Number of Sequences: 429
Number of extensions: 5931
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 595
length of database: 140,377
effective HSP length: 62
effective length of query: 533
effective length of database: 113,779
effective search space: 60644207
effective search space used: 60644207
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)