Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002157-TA|BGIBMGA002157-PA|IPR000679|Zinc finger,
GATA-type
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49300.1 68418.m06101 zinc finger (GATA type) family protein ... 40 0.004
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 39 0.008
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 39 0.011
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 39 0.011
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 38 0.014
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 38 0.014
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 38 0.014
At3g20750.1 68416.m02625 zinc finger (GATA type) family protein 38 0.019
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 38 0.019
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 38 0.019
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 38 0.025
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ... 38 0.025
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 37 0.033
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 37 0.033
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 37 0.044
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 37 0.044
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 36 0.058
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 36 0.058
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 35 0.13
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 35 0.13
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 35 0.18
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 34 0.23
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 33 0.41
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 33 0.41
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 33 0.54
At5g66320.2 68418.m08362 zinc finger (GATA type) family protein 33 0.71
At5g66320.1 68418.m08361 zinc finger (GATA type) family protein 33 0.71
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 32 0.94
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 32 0.94
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 32 0.94
At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI... 31 1.6
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI... 31 1.6
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 31 1.6
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ... 31 2.2
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 31 2.9
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 31 2.9
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 30 3.8
At5g66090.1 68418.m08326 expressed protein 30 5.0
At5g35604.1 68418.m04242 hypothetical protein 30 5.0
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family... 29 6.6
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 29 8.7
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 29 8.7
>At5g49300.1 68418.m06101 zinc finger (GATA type) family protein
similar to unknown protein (gb|AAF63824.1)
Length = 139
Score = 40.3 bits (90), Expect = 0.004
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGNRR 527
K C +C + TPLWR G LCNACG+ R R + K K +++ GNR+
Sbjct: 36 KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKK--RRGGTEDNK-KLKKSSSGGGNRK 92
Query: 528 MG 529
G
Sbjct: 93 FG 94
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 39.1 bits (87), Expect = 0.008
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 467 EVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGN 525
E K C C + TPLWR G LCNACG+ R R L +++ ++ N N
Sbjct: 39 EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNR---KKRRTLISNRSEDKKKKSHNRN 95
Query: 526 RRMG 529
+ G
Sbjct: 96 PKFG 99
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 38.7 bits (86), Expect = 0.011
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 465 MGEVKECVNCAAATTPLWRRDGTGH-YLCNACGLYTRING--VNRPPL 509
MG+ C +C +TPLWR LCNACG R G VN PL
Sbjct: 1 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPL 48
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 38.7 bits (86), Expect = 0.011
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 466 GEVKE-CVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
G+ K CV+C TPLWR G LCNACG+ +R
Sbjct: 38 GDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSR 74
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 38.3 bits (85), Expect = 0.014
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C NC +TPLWR G LCNACG+
Sbjct: 75 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 104
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 465 MGEVKECVNCAAATTPLWRRDGTGH-YLCNACGLYTRING--VNRPPL 509
MG+ C +C TPLWR LCNACG R G VN PL
Sbjct: 1 MGKQGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNYTPL 48
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 38.3 bits (85), Expect = 0.014
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C NC +TPLWR G LCNACG+
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 181
>At3g20750.1 68416.m02625 zinc finger (GATA type) family protein
Length = 208
Score = 37.9 bits (84), Expect = 0.019
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 468 VKEC--VNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
+K+C +NC A TP+WRR G LCNACG+ R
Sbjct: 156 MKKCTNMNCNALNTPMWRRGPLGPKSLCNACGIKFR 191
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
G V+ C +C TTP WR+ +G LCNACG+
Sbjct: 215 GIVRICTHCETITTPQWRQGPSGPKTLCNACGV 247
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 37.9 bits (84), Expect = 0.019
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
G V+ C +C TTP WR+ +G LCNACG+
Sbjct: 215 GIVRICTHCETITTPQWRQGPSGPKTLCNACGV 247
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 37.5 bits (83), Expect = 0.025
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
G ++ C C TP+WR TG LCNACG+ R
Sbjct: 23 GTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHR 58
>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 303
Score = 37.5 bits (83), Expect = 0.025
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
G V++C +C TP WR +G LCNACG+ R
Sbjct: 217 GIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 37.1 bits (82), Expect = 0.033
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
G ++ C +C TPLWR G LCNACG+ R
Sbjct: 227 GVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQR 262
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 37.1 bits (82), Expect = 0.033
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 463 AGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+G E + C++CA TP WR G LCNACG+
Sbjct: 213 SGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGV 248
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 36.7 bits (81), Expect = 0.044
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
G ++ C +CA+ TP WR G LCNACG+
Sbjct: 176 GGMRRCTHCASEKTPQWRTGPLGPKTLCNACGV 208
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 36.7 bits (81), Expect = 0.044
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 470 ECVNCAAATTPLWRRDGTGH-YLCNACGLYTR 500
+C +C TTP WR G LCNACG+ R
Sbjct: 216 KCTHCETTTTPQWREGPNGRKTLCNACGIRFR 247
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 36.3 bits (80), Expect = 0.058
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
K C +C TPLWR G LCNACG+ R
Sbjct: 115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYR 147
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 36.3 bits (80), Expect = 0.058
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C +C +TPLWR G LCNACG+
Sbjct: 91 RRCASCDTTSTPLWRNGPKGPKSLCNACGI 120
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 466 GEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
G + C++CA TP WR G LCNACG+
Sbjct: 194 GGGRRCLHCATEKTPQWRTGPMGPKTLCNACGV 226
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 468 VKECVNCAAATTPLWRRDGTG-HYLCNACGLYTR 500
++ C +C TPLWR G LCNACG+ R
Sbjct: 198 IRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQR 231
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C +CA+ TP WR G LCNACG+
Sbjct: 158 RRCTHCASEKTPQWRTGPLGPKTLCNACGV 187
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 34.3 bits (75), Expect = 0.23
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
++C +C A TP WR G LCNACG+
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGV 223
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 33.5 bits (73), Expect = 0.41
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 468 VKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+++C++C TP WR G LCNACG+
Sbjct: 228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGV 258
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 33.5 bits (73), Expect = 0.41
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 468 VKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+++C++C TP WR G LCNACG+
Sbjct: 228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGV 258
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 33.1 bits (72), Expect = 0.54
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 467 EVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ ++C +C TP WR G LCNACG+
Sbjct: 219 QTRQCGHCGVQKTPQWRAGPLGAKTLCNACGV 250
>At5g66320.2 68418.m08362 zinc finger (GATA type) family protein
Length = 339
Score = 32.7 bits (71), Expect = 0.71
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 449 HNLLPIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
H + F + + ++C +C TP WR G LCNACG+
Sbjct: 229 HKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGV 278
>At5g66320.1 68418.m08361 zinc finger (GATA type) family protein
Length = 339
Score = 32.7 bits (71), Expect = 0.71
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 449 HNLLPIDDGFDPSMAGMGEVKECVNCAAATTPLWRRDGTG-HYLCNACGL 497
H + F + + ++C +C TP WR G LCNACG+
Sbjct: 229 HKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGV 278
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 32.3 bits (70), Expect = 0.94
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 469 KECVNCAAATTPLWRRDGTG-HYLCNACGL 497
+ C +C TP WR G LCNACG+
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGV 209
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.3 bits (70), Expect = 0.94
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 471 CVNCAAA--TTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQ--QALPSNGN 525
C +C +TP+ RR G LCNACGL G R KA PQ Q LP N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDL---SKASPQTAQNLPLNKN 279
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.3 bits (70), Expect = 0.94
Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 471 CVNCAAA--TTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQ--QALPSNGN 525
C +C +TP+ RR G LCNACGL G R KA PQ Q LP N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDL---SKASPQTAQNLPLNKN 279
>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 31.5 bits (68), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 471 CVNCAAAT--TPLWRRDGTG-HYLCNACGLYTRINGVNR 506
C +C ++ TP+ RR +G LCNACGL+ G R
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLR 252
>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 31.5 bits (68), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 471 CVNCAAAT--TPLWRRDGTG-HYLCNACGLYTRINGVNR 506
C +C ++ TP+ RR +G LCNACGL+ G R
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLR 252
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 31.5 bits (68), Expect = 1.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 SQLEHEQQMQQYAPKLEESAETRELQQHH 135
SQL+H QQ QQ + ++ + +LQ HH
Sbjct: 735 SQLQHHQQQQQQQQQQQQQHQLTQLQHHH 763
>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
NTL1 protein, curled-leaved tobacco, PIR2:S46419
Length = 238
Score = 31.1 bits (67), Expect = 2.2
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 471 CVNCAAATTPLWRRDGTG-HYLCNACGL 497
C +C TP WR G LCNACG+
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGV 193
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 30.7 bits (66), Expect = 2.9
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 471 CVNCAAA--TTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGN 525
C +C + +TP+ RR G LCNACGL G R K + Q L N N
Sbjct: 217 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKN 274
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 30.7 bits (66), Expect = 2.9
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 471 CVNCAAA--TTPLWRRDGTG-HYLCNACGLYTRINGVNRPPLKGQKAKPQQALPSNGN 525
C +C + +TP+ RR G LCNACGL G R K + Q L N N
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQHLSLNKN 276
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 30.3 bits (65), Expect = 3.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 374 VYGSVVPQSQTVYEAPPSPNSQQVTLYTHGNTVQYKVGGEHYLGQSGGV---EYVPVSG 429
++GS+ P+ Q +PP PN ++ + T+ V G Y+ SG V +Y P SG
Sbjct: 253 LHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSG 311
>At5g66090.1 68418.m08326 expressed protein
Length = 210
Score = 29.9 bits (64), Expect = 5.0
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 166 IPVDKRLPVQYTRAPQRPAYGRGLALRYGAPHHVIVSQEGEGEDPA-HEAFLS----HKD 220
+PV R P Q A LA +YGA V+V E + E + HE +S H
Sbjct: 86 LPVIDRNPYLSEGTRQAAATTTSLAKKYGADITVVVIDEEKRESSSEHETQVSNIRWHLS 145
Query: 221 KNELQAYAATSEAGPVDGRQYAAVLGEQVAASTALEMI 258
+ + + G +G++ A++GE VA +E++
Sbjct: 146 EGGFEEFKLLERLG--EGKKATAIIGE-VADELKMELV 180
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 380 PQSQTVYEAPP---SPNSQQVTLYTHGNTVQYKVGGEH 414
P S+T+ PP SP+SQ T NTV K GGEH
Sbjct: 98 PPSRTMGPPPPVATSPSSQWSGEKTDHNTVPQKEGGEH 135
>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to root nodule extensin
[Pisum sativum] gi|15021750|gb|AAK77902; Common family
members: At5g19800, At5g57070, At1g72790 [Arabidopsis
thaliana]
Length = 102
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 159 YRSMQSPIPVDKRLPVQYTRAPQRPAYGRGLAL 191
Y+ + SP P R PV P PAY R +AL
Sbjct: 36 YQPLYSPSPSPYRSPVTLPPPPPHPAYSRPVAL 68
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 29.1 bits (62), Expect = 8.7
Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 11/125 (8%)
Query: 193 YGAPHHVIVSQEGE----GEDPAHEAFLSHKDKNELQAYAATSEAGPVDGRQYAAVLG-- 246
YG P + G+ G PA ++ S + Q Y TS GPV + Y +
Sbjct: 546 YGPPQPAAAASSGDVPYQGATPAAPSYGSTNMAPQQQQYGYTSSDGPVQQQTYPSYSSAP 605
Query: 247 EQVAASTALEMIQTTSLNNQQSVGVAYQQVKYETRGEPEPRPTTYASLQPVTSVHGGYAY 306
A + + T QQSV A Y+ G + Y T GGY Y
Sbjct: 606 PSDAYNNGTQTPATGPAYQQQSVQPA--SSTYDQTGAQQAAAAGYGGQVAPT---GGYTY 660
Query: 307 AGQSP 311
P
Sbjct: 661 PTSQP 665
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Query: 552 VCNACGLYFKLHNVRHHCAH 571
VC C F L N RHHC H
Sbjct: 44 VCYECDCQFTLINRRHHCRH 63
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.129 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,161
Number of Sequences: 28952
Number of extensions: 482527
Number of successful extensions: 866
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 70
length of query: 595
length of database: 12,070,560
effective HSP length: 85
effective length of query: 510
effective length of database: 9,609,640
effective search space: 4900916400
effective search space used: 4900916400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 62 (29.1 bits)
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