GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002156-TA|BGIBMGA002156-PA|IPR000679|Zinc finger,
GATA-type
         (301 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.7  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.5  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 243 ESILESARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVSLA 300
           + + +SA    P   Y   S  G   +             + P+ +A HH H A + A
Sbjct: 21  QQLFQSATTEAPA-AYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 243 ESILESARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVSLA 300
           + + +SA    P   Y   S  G   +             + P+ +A HH H A + A
Sbjct: 21  QQLFQSATTEAPA-AYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAAAAA 77


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 198 HNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAV 232
           H++N PL++ + + Q  +    ++N K  RS  +V
Sbjct: 755 HDINNPLSVNQLTGQCVRNDSSDTNGKETRSIISV 789


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 198 HNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAV 232
           H++N PL++ + + Q  +    ++N K  RS  +V
Sbjct: 647 HDINNPLSVNQLTGQCVRNDSSDTNGKETRSIISV 681


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,190
Number of Sequences: 317
Number of extensions: 2140
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 301
length of database: 114,650
effective HSP length: 56
effective length of query: 245
effective length of database: 96,898
effective search space: 23740010
effective search space used: 23740010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)