GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002156-TA|BGIBMGA002156-PA|IPR000679|Zinc finger,
GATA-type
         (301 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    86   7e-18
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    81   2e-16
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    74   3e-14
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    35   0.016
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    28   1.4  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    28   1.9  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    27   2.5  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    26   5.8  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   7.6  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   7.6  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 3/90 (3%)

Query: 165 TMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIK 224
           T C NC TT T LWRR+  G  +CNACGLY+K+H V+RP+TMKK  I+ RKR   N N  
Sbjct: 170 TFCQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKKAIIKRRKRLVFNGN-- 227

Query: 225 ADRSAKAVQRAVSAGIKMESILESARRSPP 254
           A+ S   ++R +S+G    S+ + + R  P
Sbjct: 228 ANESQHNLKR-MSSGDSGSSVKQQSTRDGP 256



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 23/48 (47%), Positives = 37/48 (77%)

Query: 38  CVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQR 85
           C NC   +TPLWRRD +G+ +CNACGLY K++G++RP+   + ++++R
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKKAIIKRR 219



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 164 GTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPL 204
           G  C+NC  T TSLWRR      +CNACGLY K     RP+
Sbjct: 9   GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARPV 49



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 23/42 (54%)

Query: 35 GRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLK 76
          G+ C NC    T LWRR      LCNACGLY K     RP+K
Sbjct: 9  GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARPVK 50


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 154 QKKGMGAKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQT 213
           + KG        +C NC +T TSLWR++  G+TVCNACGLY +LH  NRP+ +KK+ I T
Sbjct: 406 RNKGSSKALENLVCANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKI-T 464

Query: 214 RKRKPKNSNIKADRS--AKAVQRAVSAGIKMESILESARRSPPRL 256
           R+R+ K    +   S   K+    +S  + M  IL S     P+L
Sbjct: 465 RRRRGKGPGGEDGMSDEVKSEFPVLSKSVTMAEILSSKGLESPQL 509



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 38  CVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQPR 79
           C NCG   TPLWRR     ++LCNACGLYNK  G+ RPL  PR
Sbjct: 365 CFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPL-SPR 406



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 34  EGRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQR 85
           E   C NC +  T LWR+D  G  +CNACGLY +++G NRP+   +  + +R
Sbjct: 415 ENLVCANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKITRR 466



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 166 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLT 205
           +C NC  T T LWRR       +CNACGLY K + V RPL+
Sbjct: 364 VCFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPLS 404


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 6/85 (7%)

Query: 160 AKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKR--- 216
           A  P   CTNCQT  T LWRR+  G+ +CNACGL+ K++ V RPL++K D I+ R R   
Sbjct: 628 ATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIKKRNRGVG 687

Query: 217 ---KPKNSNIKADRSAKAVQRAVSA 238
               PK S  +   + K+  ++ SA
Sbjct: 688 TSATPKQSGGRKGSTRKSSSKSSSA 712



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 38  CVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRH 86
           C NC    TPLWRR   G  LCNACGL+ K+NG+ RPL     ++++R+
Sbjct: 635 CTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPLSLKTDVIKKRN 683


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 167 CTNCQTTATSLWRRNVQGET---VCNACGLYFKLHNVNRP--LTMKKDSIQTRKRKPKNS 221
           C NC T  T+ WR          +CNACG+Y+      RP  L     + +T K    ++
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRPRNLWSTYKAFETEKPLENDA 410

Query: 222 NIKADRSAKAVQRAVSAGIKMESILESARRSPP 254
             + + +   + +     I +   LE+A R  P
Sbjct: 411 FAQLELAVYKLSQQRKLSISIFRELENAGRHSP 443



 Score = 33.1 bits (72), Expect = 0.050
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 38  CVNCGAIHTPLWRRD---GTGHYLCNACGLYNKMNGMNRP 74
           C NCG I T  WR          LCNACG+Y       RP
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRP 390


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 166 MCTNCQTTATSLWRRNVQGETVCNACGL 193
           +C+ C+    +L      G+TVC +CGL
Sbjct: 19  ICSECREDPPNLVEEFSSGDTVCGSCGL 46


>SPAC22E12.17c |glo3||ARF GTPase activating
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 34 EGRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMN 72
          + + C +CGA   P W     G YLC  C   ++  G++
Sbjct: 20 DNKVCFDCGA-KNPTWSSTTFGIYLCLDCSAAHRNMGVH 57


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 56  HYLCNACGLYNKMNGMNRPLKQPRR-LVRQRHAALAEPPHDVRTSPSLSLSPEERA 110
           H +  A GL+ +     R +  P    ++ RHAA   P    +TS  L L PE  A
Sbjct: 49  HRISAAQGLFQRRRNA-RKIDHPLGWFLKNRHAAAHIPQRTTKTSQKLVLLPENHA 103


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 176 SLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAK 230
           +L++    GE+ C + G   +       LT     +Q  +R+P  SN+   R+ K
Sbjct: 6   TLFKVTTYGESHCKSVGCIVEGCPPGMNLTESDVQVQLTRRRPGQSNLTTPRNEK 60


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/22 (40%), Positives = 19/22 (86%)

Query: 215 KRKPKNSNIKADRSAKAVQRAV 236
           K+  KN+N++++R+AKA+++ V
Sbjct: 28  KKYDKNTNLQSNRNAKALEKRV 49


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 167 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRK 217
           C+ C   AT L     + + VC++C +    + + R   + + ++Q RK K
Sbjct: 14  CSKCDNKATVL----TKSDAVCDSCFVRRIENKIRRQFELVRPNLQGRKSK 60


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,661
Number of Sequences: 5004
Number of extensions: 37841
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 18
length of query: 301
length of database: 2,362,478
effective HSP length: 72
effective length of query: 229
effective length of database: 2,002,190
effective search space: 458501510
effective search space used: 458501510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)