GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002156-TA|BGIBMGA002156-PA|IPR000679|Zinc finger,
GATA-type
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    97   1e-20
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  43   3e-04
SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)                  33   0.29 
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               32   0.50 
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57923| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  30   2.0  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)                   29   4.7  
SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   6.1  
SB_53919| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   6.1  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                29   6.1  
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                28   8.1  
SB_40031| Best HMM Match : PPI_Ypi1 (HMM E-Value=2.5)                  28   8.1  
SB_32441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   28   8.1  

>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 164 GTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 223
           GT C NC TT T+LWRRN  G+ VCNACGLY+KLH VNRPL+MKKD IQTR RK  + + 
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRPLSMKKDGIQTRNRKVSSKSK 468

Query: 224 KADRSAK 230
             +++ K
Sbjct: 469 NKNKNVK 475



 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 35  GRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQRH 86
           G  C NC    T LWRR+  G  +CNACGLY K++ +NRPL   +  ++ R+
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRPLSMKKDGIQTRN 460


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 36  RECVNCGAIHTPLWRRDGTGHYLCNACGLYNK 67
           +EC +CG   TPLWR    G  LCNACG+  K
Sbjct: 221 KECASCGVAKTPLWRDAEDGTPLCNACGIRYK 252



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 167 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNV 200
           C +C    T LWR    G  +CNACG+ +K + +
Sbjct: 223 CASCGVAKTPLWRDAEDGTPLCNACGIRYKKYRI 256


>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
          Length = 225

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 167 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLTMKKDSIQTRK--RKPKNSNIK 224
           C  C+   + +WR+   GE +CN C  + K  N +   T ++ S ++RK   + K S+ K
Sbjct: 9   CFACKINESLMWRKGANGEILCNCC--HLKRVNAS-TRTQRQSSKESRKLVARIKASSRK 65

Query: 225 ADRSAKA 231
              + K+
Sbjct: 66  GHHNGKS 72



 Score = 32.7 bits (71), Expect = 0.38
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 34 EGRECVNCGAIHTPLWRRDGTGHYLCNACGLYNKMNGMNRPLKQPRRLVRQ 84
          +  +C  C    + +WR+   G  LCN C L  ++N   R  +Q  +  R+
Sbjct: 5  QNAQCFACKINESLMWRKGANGEILCNCCHL-KRVNASTRTQRQSSKESRK 54


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 184 GETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRK-PKNSNIKADRSAKAVQRAVSAGIKM 242
           G   C  C  +FK   V R L  K   +++ + + P + N +A   A  +QR   AG+ +
Sbjct: 20  GAYTCEGCKSFFK-RTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQACRLQRCFDAGMVL 78

Query: 243 ESILESARR 251
             + +  +R
Sbjct: 79  NGVRKEKKR 87


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 207 KKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRSP-PRLGYYVQSAEG 265
           + DS +  K     +N   + + KA +       K+ SI +S  +S  P +G      +G
Sbjct: 459 RPDSAKENKDPALINNDSIEETPKAAKPEAKTVSKIPSIGKSGSKSKIPSIGRQDSQGKG 518

Query: 266 MKLEEPQHHVMYIGVPELGPHKAA 289
              EEP+H V   G P +   K A
Sbjct: 519 SDEEEPEHIVNGHGKPPVSKSKIA 542


>SB_57923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 67  KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSP 106
           ++NG +   + PR ++R RHA LAE   D +  P+  L+P
Sbjct: 36  RINGEDNN-QDPRPVIRLRHAQLAEIVDDKKKEPNFYLAP 74


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 193 LYFKLHNVNRPLTMKKDSIQTRKRKPK-NSNIKADRSAKAVQRAVSAGIKMESILESARR 251
           L  K ++ ++P + K+    ++KRKPK      A   ++AV  +  AG +  S+L SA  
Sbjct: 121 LEMKQYSSDKPPSKKQKDPSSKKRKPKGKEGTAAPLHSEAVDSSGVAGDQRSSLLVSATL 180

Query: 252 SP 253
           +P
Sbjct: 181 NP 182


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 193 LYFKLHNVNRPLTMKKDSIQTRKRKPK-NSNIKADRSAKAVQRAVSAGIKMESILESARR 251
           L  K ++ ++P + K+    ++KRKPK      A   ++AV  +  AG +  S+L SA  
Sbjct: 50  LEMKQYSSDKPPSKKQKDPSSKKRKPKGKEGTAAPLHSEAVDSSGVAGDQRSSLLVSATL 109

Query: 252 SP 253
           +P
Sbjct: 110 NP 111


>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 67  KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSPEERAH 111
           K++G  R   + RR +R    A   P H  RT P    SPE + H
Sbjct: 514 KVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPECQPH 558


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 73   RPLKQPRRLVRQRHAALAEP--PHDVRTSPSLSLSPEER 109
            RP K+PR   R+R  + + P      RTSPS   +PE+R
Sbjct: 1044 RPRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDR 1082


>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/92 (26%), Positives = 35/92 (38%)

Query: 195 FKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARRSPP 254
           F LH + R L +K +   +    PK  N K D   K   + + A +   +   S   S P
Sbjct: 137 FILHYLARCLCIKIEESGSEVEIPKAINFKLDDIEKRQSKLLGARMYRVNNCYSELSSTP 196

Query: 255 RLGYYVQSAEGMKLEEPQHHVMYIGVPELGPH 286
            +    Q       + PQ   +  G  ELG H
Sbjct: 197 NVNVLDQKKPYDTFDSPQFSKIADGFRELGRH 228


>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
          Length = 1272

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 67   KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSPE 107
            K++G  R  K+  R++R    A   P H  RT P    SPE
Sbjct: 1119 KVDGSGRLTKRNSRVLRAYAPATPSPDHQYRTPPPPPRSPE 1159


>SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 468

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 30  EFFTEGRECVNCGAIHTPLWRRDGTGHYLCNA 61
           +FF+E R C NCG       + +G G Y C A
Sbjct: 104 KFFSENRLCFNCGRTGHRENKCNGRGCYKCKA 135


>SB_53919| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 289

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 30  EFFTEGRECVNCGAIHTPLWRRDGTGHYLCNA 61
           +FF+E R C NCG       + +G G Y C A
Sbjct: 167 KFFSENRLCFNCGRTGHRENKCNGRGCYKCKA 198


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 30  EFFTEGRECVNCGAIHTPLWRRDGTGHYLCNA 61
           +FF+E R C NCG       + +G G Y C A
Sbjct: 329 KFFSENRLCFNCGRTGHRENKCNGRGCYKCKA 360


>SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 449

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 30  EFFTEGRECVNCGAIHTPLWRRDGTGHYLCNA 61
           +FF+E R C NCG       + +G G Y C A
Sbjct: 104 KFFSENRLCFNCGRTGHRENKCNGRGCYKCKA 135


>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 287

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 67  KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSPEER 109
           K++G  R   + RR +R    A   P H  RT P    SPE +
Sbjct: 134 KVDGSGRLTLRNRRFLRAYTPATPTPDHQYRTPPPPPRSPERQ 176


>SB_40031| Best HMM Match : PPI_Ypi1 (HMM E-Value=2.5)
          Length = 290

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 67  KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSP 100
           ++NG +   + PR ++R RHA LAE   D ++SP
Sbjct: 169 RINGEDNN-QDPRPVIRLRHAQLAEIVDDKKSSP 201


>SB_32441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 67  KMNGMNRPLKQPRRLVRQRHAALAEPPHDVRTSP 100
           ++NG +   + PR ++R RHA LAE   D ++SP
Sbjct: 51  RINGEDNN-QDPRPVIRLRHAQLAEIVDDKKSSP 83


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 277 YIGVPELGPHKAAPHHDHSAVS 298
           YI V +L PHK  PH  H A S
Sbjct: 173 YIDVDKLRPHKTKPHKAHGANS 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,059
Number of Sequences: 59808
Number of extensions: 325487
Number of successful extensions: 3024
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3009
Number of HSP's gapped (non-prelim): 27
length of query: 301
length of database: 16,821,457
effective HSP length: 82
effective length of query: 219
effective length of database: 11,917,201
effective search space: 2609867019
effective search space used: 2609867019
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)