GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002156-TA|BGIBMGA002156-PA|IPR000679|Zinc finger,
GATA-type
         (301 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   7.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   7.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 217 KPKNS---NIKADRSAKAVQRAVSAGIKMESILESARRSPPRL 256
           KPKNS   NI      K   R ++AGI  +SI  S  R  PR+
Sbjct: 518 KPKNSQDNNISLLEQQKIPLR-MTAGIDPKSIFNSGYRPKPRM 559


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)

Query: 286 HKAAPHHDHS 295
           H A PHH HS
Sbjct: 436 HAATPHHQHS 445


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 258 YYVQSAEGMKLEEPQHHVMYIGVPEL 283
           YYV +   MK E   ++V Y GV ++
Sbjct: 277 YYVNTKPFMKSEYGANNVQYQGVQDI 302


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 71  MNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSP 106
           +N  L   R L RQ   AL E P D       SL+P
Sbjct: 38  LNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAP 73


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 71  MNRPLKQPRRLVRQRHAALAEPPHDVRTSPSLSLSP 106
           +N  L   R L RQ   AL E P D       SL+P
Sbjct: 38  LNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAP 73


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,004
Number of Sequences: 429
Number of extensions: 2455
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 301
length of database: 140,377
effective HSP length: 57
effective length of query: 244
effective length of database: 115,924
effective search space: 28285456
effective search space used: 28285456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)