Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002156-TA|BGIBMGA002156-PA|IPR000679|Zinc finger,
GATA-type
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 46 4e-05
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 45 7e-05
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 45 7e-05
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 43 2e-04
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 43 2e-04
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 42 4e-04
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ... 42 5e-04
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 42 5e-04
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 42 5e-04
At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI... 42 7e-04
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI... 42 7e-04
At5g49300.1 68418.m06101 zinc finger (GATA type) family protein ... 40 0.002
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 40 0.002
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 39 0.005
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 39 0.005
At3g20750.1 68416.m02625 zinc finger (GATA type) family protein 39 0.005
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 38 0.008
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 38 0.011
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 38 0.011
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 38 0.011
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 38 0.011
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 38 0.011
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 37 0.014
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 37 0.014
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 37 0.019
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 36 0.025
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 36 0.025
At5g66320.2 68418.m08362 zinc finger (GATA type) family protein 36 0.044
At5g66320.1 68418.m08361 zinc finger (GATA type) family protein 36 0.044
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 36 0.044
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ... 34 0.10
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 34 0.10
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly... 34 0.13
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 33 0.18
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 33 0.31
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 33 0.31
At1g53560.1 68414.m06078 expressed protein 30 1.7
At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /... 30 2.2
At1g11520.1 68414.m01323 pliceosome associated protein-related c... 29 3.8
At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /... 29 5.0
At1g45688.2 68414.m05201 expressed protein 28 6.7
At1g45688.1 68414.m05202 expressed protein 28 6.7
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 28 6.7
At5g42860.1 68418.m05224 expressed protein 28 8.8
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 149 FLDYKQKKGMGAKRP--GTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
FL+ +K G G C NC TT+T LWR +G +++CNACG+ FK
Sbjct: 57 FLNGSKKGGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C NC TPLWR G LCNACG+
Sbjct: 75 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 104
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
C NC TT+T LWR +G +++CNACG+ FK
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFK 184
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C NC TPLWR G LCNACG+
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPKSLCNACGI 181
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 155 KKGMGAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
KKG A C +C TT+T LWR +G +++CNACG+ FK
Sbjct: 81 KKGGVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFK 123
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +C TPLWR G LCNACG+
Sbjct: 91 RRCASCDTTSTPLWRNGPKGPKSLCNACGI 120
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R CV+CG I TPLWR G LCNACG+ ++
Sbjct: 42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSR 74
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 225
C +C T T LWR G +++CNACG+ + L M+ + + ++ N+++
Sbjct: 44 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKR-QAALGMRSEEKKKNRKSNCNNDLNL 102
Query: 226 D-RSAK 230
D R+AK
Sbjct: 103 DHRNAK 108
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 155 KKGMGAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
KK K CT+C+TT T WR G +T+CNACG+ F+
Sbjct: 205 KKRKKNKSRRLKCTHCETTTTPQWREGPNGRKTLCNACGIRFR 247
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 225
C C T+ T LWR G +++CNACG + N + T+ + + +K+K N N K
Sbjct: 43 CAICGTSKTPLWRGGPAGPKSLCNACG----IRNRKKRRTLISNRSEDKKKKSHNRNPKF 98
Query: 226 DRSAKAVQRAVSAGIKME-SILESARRSPPRLGYYVQSA 263
S K + + M+ S E+ RR+ +LG Q+A
Sbjct: 99 GDSLKQRLMELGREVMMQRSTAENQRRN--KLGEEEQAA 135
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 34 EGRECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
E + C CG TPLWR G LCNACG+ N+
Sbjct: 39 EKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNR 73
>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 303
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
CT+C+TT T WR G +T+CNACG+ F+
Sbjct: 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
Score = 34.7 bits (76), Expect = 0.077
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R+C +C TP WR +G LCNACG+
Sbjct: 220 RKCTHCETTKTPQWREGPSGPKTLCNACGV 249
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 166 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
+CT+C+T T WR+ G +T+CNACG+ FK
Sbjct: 219 ICTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +C I TP WR+ +G LCNACG+
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGV 247
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 166 MCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
+CT+C+T T WR+ G +T+CNACG+ FK
Sbjct: 219 ICTHCETITTPQWRQGPSGPKTLCNACGVRFK 250
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +C I TP WR+ +G LCNACG+
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGV 247
>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 163 PGTMCTNC--QTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPK 219
P CT+C + T + RR G T+CNACGL++ R L+ K + Q KP
Sbjct: 210 PEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPD 269
Query: 220 NSNIKADRSAKAVQRAVS 237
+ AD + A S
Sbjct: 270 DGGSVADAANNLNTEAAS 287
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 38 CVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
C +CG TP+ RR +G LCNACGL+ G R L +
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 163 PGTMCTNC--QTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPK 219
P CT+C + T + RR G T+CNACGL++ R L+ K + Q KP
Sbjct: 210 PEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPD 269
Query: 220 NSNIKADRSAKAVQRAVS 237
+ AD + A S
Sbjct: 270 DGGSVADAANNLNTEAAS 287
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 38 CVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
C +CG TP+ RR +G LCNACGL+ G R L +
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
>At5g49300.1 68418.m06101 zinc finger (GATA type) family protein
similar to unknown protein (gb|AAF63824.1)
Length = 139
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKA 225
C +C T+ T LWR G +++CNACG + N + +D+ + +K N K
Sbjct: 38 CADCGTSKTPLWRGGPVGPKSLCNACG----IRNRKKRRGGTEDNKKLKKSSSGGGNRKF 93
Query: 226 DRSAKAVQRAVSAGIKMESILESARRSPPRLGYYVQSA 263
S K Q + GI+ S +E R+ +LG Q+A
Sbjct: 94 GESLK--QSLMDLGIRKRSTVEKQRQ---KLGEEEQAA 126
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
+ C +CG TPLWR G LCNACG+ N+
Sbjct: 36 KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNR 68
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 35 GRECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
GR+C +CGA TP WR G LCNACG+ K
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK 226
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 164 GTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
G C +C T WR G +T+CNACG+ +K
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK 226
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 166 MCTNCQTTATSLWRRNVQG-ETVCNACGL 193
+C++C TT T LWR +G +++CNACG+
Sbjct: 231 VCSDCNTTKTPLWRSGPRGPKSLCNACGI 259
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +C TPLWR G LCNACG+
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGI 259
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 166 MCTNCQTTATSLWRRNVQG-ETVCNACGL 193
+C++C TT T LWR +G +++CNACG+
Sbjct: 200 ICSDCNTTKTPLWRSGPRGPKSLCNACGI 228
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +C TPLWR G LCNACG+
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGI 228
>At3g20750.1 68416.m02625 zinc finger (GATA type) family protein
Length = 208
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 39 VNCGAIHTPLWRRDGTG-HYLCNACGL 64
+NC A++TP+WRR G LCNACG+
Sbjct: 162 MNCNALNTPMWRRGPLGPKSLCNACGI 188
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 167 CTN--CQTTATSLWRRNVQG-ETVCNACGLYFK 196
CTN C T +WRR G +++CNACG+ F+
Sbjct: 159 CTNMNCNALNTPMWRRGPLGPKSLCNACGIKFR 191
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 35 GRECVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGM---NRPLKQPRRLVRQRHA 87
GR C++C TP WR G LCNACG+ K + RP P V RH+
Sbjct: 196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSP-TFVMARHS 251
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 159 GAKRPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
G G C +C T T WR G +T+CNACG+ +K
Sbjct: 191 GESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYK 229
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 34 EGRECVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGM---NRPLKQPRRLVRQRHAAL 89
E R C++C TP WR G LCNACG+ K + RP P V +H+
Sbjct: 217 EERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASP-TFVLAKHSNS 275
Query: 90 AEPPHDVRTSPSLSLSPEERAH 111
++R +S + E H
Sbjct: 276 HRKVMELRRQKEMSRAHHEFIH 297
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 152 YKQKKGMGAKRPG----TMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
+++KK + + G C +C T T WR G +T+CNACG+ +K
Sbjct: 202 HRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 251
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 33 TEGRECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
T+ R+C +CG TP WR G LCNACG+ K
Sbjct: 218 TQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYK 253
Score = 31.9 bits (69), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
C +C T WR G +T+CNACG+ +K
Sbjct: 223 CGHCGVQKTPQWRAGPLGAKTLCNACGVRYK 253
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQGE-TVCNACGLYFK 196
C++C T T LWR +G T+CNACG+ ++
Sbjct: 117 CSHCGTRKTPLWREGPRGAGTLCNACGMRYR 147
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 29 AEFFTEGRECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
++F + C +CG TPLWR G LCNACG+
Sbjct: 108 SKFGITDKSCSHCGTRKTPLWREGPRGAGTLCNACGM 144
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 156 KGMGAKRPGTMCTNCQTT--ATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQ 212
+G ++P +C +C T+ +T + RR G T+CNACGL + R L+ K Q
Sbjct: 206 EGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS-KVPPPQ 264
Query: 213 TRKRKPKNSNIKADRSA 229
T + N N A+ A
Sbjct: 265 TPQHLSLNKNEDANLEA 281
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 CVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
C +CG TP+ RR G LCNACGL G R L +
Sbjct: 217 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 259
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 156 KGMGAKRPGTMCTNCQTT--ATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQ 212
+G ++P +C +C T+ +T + RR G T+CNACGL + R L+ K Q
Sbjct: 208 EGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLS-KVPPPQ 266
Query: 213 TRKRKPKNSNIKADRSA 229
T + N N A+ A
Sbjct: 267 TPQHLSLNKNEDANLEA 283
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 CVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
C +CG TP+ RR G LCNACGL G R L +
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 163 PGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
P C +C+ T T WR G +T+CNACG+ +K
Sbjct: 227 PLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R+C++C TP WR G LCNACG+ K
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 163 PGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
P C +C+ T T WR G +T+CNACG+ +K
Sbjct: 227 PLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R+C++C TP WR G LCNACG+ K
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
CT+C + T WR G +T+CNACG+ FK
Sbjct: 181 CTHCASEKTPQWRTGPLGPKTLCNACGVRFK 211
Score = 35.9 bits (79), Expect = 0.033
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 23 GRGVELAEFFTEG---RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGM---NRPL 75
GR + TEG R C +C + TP WR G LCNACG+ K + RP
Sbjct: 163 GRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPA 222
Query: 76 KQPRRLVRQRHAALAEPPHDVRTSPSLSLSPEE 108
P ++ Q H+ ++R + P++
Sbjct: 223 SSPTFVLTQ-HSNSHRKVMELRRQKEVMRQPQQ 254
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 36.3 bits (80), Expect = 0.025
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGL 193
C+ C+TT T +WR G +++CNACG+
Sbjct: 28 CSECKTTKTPMWRGGPTGPKSLCNACGI 55
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R C C TP+WR TG LCNACG+ ++
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHR 58
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGM---NRPLKQPRRLVRQRHAALAE 91
R C +CG +TP WR G LCNACG+ K + RP P + H+ L
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSP-TFSNEIHSNLHR 238
Query: 92 PPHDVRTSPSL 102
++R S L
Sbjct: 239 KVLELRKSKEL 249
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
C++C T T WR G +T+CNACG+ FK
Sbjct: 182 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFK 212
>At5g66320.2 68418.m08362 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 162 RPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
+P C++C T WR G +T+CNACG+ +K
Sbjct: 246 QPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R+C +CG TP WR G LCNACG+ K
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At5g66320.1 68418.m08361 zinc finger (GATA type) family protein
Length = 339
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 162 RPGTMCTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
+P C++C T WR G +T+CNACG+ +K
Sbjct: 246 QPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNK 67
R+C +CG TP WR G LCNACG+ K
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
CT+C + T WR G +T+CNACG+ +K
Sbjct: 160 CTHCASEKTPQWRTGPLGPKTLCNACGVRYK 190
Score = 34.7 bits (76), Expect = 0.077
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGLYNKMNGM---NRPLKQPRRLVRQ 84
R C +C + TP WR G LCNACG+ K + RP P ++ Q
Sbjct: 158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQ 210
>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
NTL1 protein, curled-leaved tobacco, PIR2:S46419
Length = 238
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 167 CTNCQTTATSLWRRNVQG-ETVCNACGLYFK 196
C++C T WR G +T+CNACG+ FK
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFK 196
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 RECVNCGAIHTPLWRRDGTG-HYLCNACGL 64
R C +CG TP WR G LCNACG+
Sbjct: 164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGV 193
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 38 CVNCGAIHTPLWRRDGTGH-YLCNACG 63
C +CG +TPLWR LCNACG
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACG 33
>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein identical to Probable
FKBP-type peptidyl-prolyl cis-trans isomerase 2,
chloroplast precursor (Ppiase) (Rotamase)
(SP:O22870)[Arabidopsis thaliana]; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 223
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 192 GLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQRAVSAGIKMESILESARR 251
GL K N +R + + + +TR++ K SN+ + R A + VS G+ M S+ A
Sbjct: 19 GLTTKNPNSSRYIAARVIASETREQSCKISNLSSRREAMLLVLGVSGGLSMSSLAAYAAG 78
Query: 252 SPP 254
PP
Sbjct: 79 LPP 81
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 38 CVNCGAIHTPLWRRDGTGH-YLCNACG 63
C +CG TPLWR LCNACG
Sbjct: 7 CYHCGVTSTPLWRNGPPEKPVLCNACG 33
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 158 MGAKRPGTMCTNCQTTATSLWRRNVQGETV-CNACG 192
MG + P C +C T+T LWR + V CNACG
Sbjct: 1 MGKQGP---CYHCGVTSTPLWRNGPPEKPVLCNACG 33
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 167 CTNCQT--TATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 223
C +C +T + RR G T+CNACGL + R L+ K S QT + P N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS--KASPQTAQNLPLNKNE 280
Query: 224 KAD 226
A+
Sbjct: 281 DAN 283
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 26 VELAEFFTEGRECVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
+E +E + C +CG TP+ RR G LCNACGL G R L +
Sbjct: 211 IESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 167 CTNCQT--TATSLWRRNVQG-ETVCNACGLYFKLHNVNRPLTMKKDSIQTRKRKPKNSNI 223
C +C +T + RR G T+CNACGL + R L+ K S QT + P N N
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLS--KASPQTAQNLPLNKNE 280
Query: 224 KAD 226
A+
Sbjct: 281 DAN 283
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 26 VELAEFFTEGRECVNCGAIH--TPLWRRDGTG-HYLCNACGLYNKMNGMNRPLKQ 77
+E +E + C +CG TP+ RR G LCNACGL G R L +
Sbjct: 211 IESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265
>At1g53560.1 68414.m06078 expressed protein
Length = 153
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 271 PQHHVMYIGVPELGPHKAAPHHDHS 295
P HH + IG+P+ P +PHHD S
Sbjct: 34 PSHHPV-IGIPQPSPPPGSPHHDIS 57
>At2g41630.1 68415.m05144 transcription initiation factor IIB-1 /
general transcription factor TFIIB-1 (TFIIB1) identical
to transcription initiation factor IIB-1 (TFIIB1)
SP:P48512 from [Arabidopsis thaliana]
Length = 312
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 167 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVN 201
CT+C+ T L + G+T+C+ CGL + H+++
Sbjct: 6 CTDCKKE-TELVVDHSAGDTLCSECGLVLESHSID 39
>At1g11520.1 68414.m01323 pliceosome associated protein-related
contains similarity to spliceosome associated protein
SAP 145 GI:1173904 from [Homo sapiens]
Length = 196
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 214 RKRKPKNSNIKADRSAKAVQRAVSA---GIKMESILE---SARRSPPRLGYYVQSAEGMK 267
RKRK KN +AD A V +++S+ GI+ +E R+ P R Y V +G
Sbjct: 71 RKRKKKNKASQADVDAMDVSKSLSSTPTGIETPDAIELRKEQRKEPDRALYQVLEEKGES 130
Query: 268 LEEP 271
+ P
Sbjct: 131 VVAP 134
>At3g10330.1 68416.m01239 transcription initiation factor IIB-2 /
general transcription factor TFIIB-2 (TFIIB2) identical
to SP|Q9SS44 Transcription initiation factor IIB-2
(General transcription factor TFIIB-2) (AtTFIIB2)
{Arabidopsis thaliana}
Length = 312
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 167 CTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVN 201
C++C+ ++ + G+TVC+ CGL + H+++
Sbjct: 6 CSDCKRHTEVVFDHSA-GDTVCSECGLVLESHSID 39
>At1g45688.2 68414.m05201 expressed protein
Length = 248
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 248 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAV 297
S RSP R YYVQS + + + P L P +P H HS++
Sbjct: 16 SPARSPRRPVYYVQSPSRDSHDGEKTATSFHSTPVLSP-MGSPPHSHSSM 64
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 248 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAV 297
S RSP R YYVQS + + + P L P +P H HS++
Sbjct: 16 SPARSPRRPVYYVQSPSRDSHDGEKTATSFHSTPVLSP-MGSPPHSHSSM 64
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 201 NRPLTMKKDSIQTRKRKPKNSNIKADRSAKAVQ-RAVSAGIKMESILESARRSPPRLGYY 259
+R L + DS+ + KP N + +RS+K+ Q + + K LE +R GY
Sbjct: 220 SRLLNLASDSLAKNEFKPDTPNFREERSSKSSQWKPCADNNKAAVALERSRELSN--GYI 277
Query: 260 VQSAEG 265
+ SA G
Sbjct: 278 MVSANG 283
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 248 SARRSPPRLGYYVQSAEGMKLEEPQHHVMYIGVPELGPHKAAPHHDHSAVS 298
S RSP R Y+VQS + + + P L +P H HS+ S
Sbjct: 16 SPTRSPRRPAYFVQSPSRDSHDGEKTATSFHSTPVLTSPMGSPPHSHSSSS 66
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,773
Number of Sequences: 28952
Number of extensions: 213647
Number of successful extensions: 677
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 78
length of query: 301
length of database: 12,070,560
effective HSP length: 81
effective length of query: 220
effective length of database: 9,725,448
effective search space: 2139598560
effective search space used: 2139598560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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