Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002155-TA|BGIBMGA002155-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    29   0.24 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   0.56 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   3.0  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    25   3.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   3.9  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   5.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   6.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   9.0  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 33  SPPLGHSCAVTSATTLRHNWPHKYIVRRPI 62
           SPPLG    V +  TL   WP     R PI
Sbjct: 867 SPPLGEGLNVPAIITLEKTWPLSRETREPI 896


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 33  SPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATPTDQLDLPDAAAGDARLLEWR 92
           +P +G     TS    R++   ++I    I G   +    + QLD+   AAG    L WR
Sbjct: 307 TPAIGFDMGGTSTDVSRYDGKFEHIYEANIFGLYIQ----SPQLDIQTVAAGGGSRLFWR 362

Query: 93  N 93
           N
Sbjct: 363 N 363


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 34  PPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATPTDQLDLPDAAAGDARLLEWRN 93
           P +G     TS    R+   ++++      G        + QLD+   AAG    L W+N
Sbjct: 323 PVIGFDMGGTSTDVSRYGGSYEHVFETTTAG----VTIQSPQLDINTVAAGGGSRLFWKN 378


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 58  VRRPITGRRTKCATPTDQLDLPDAAAGD 85
           V+ PI GR +      D  D+PD   GD
Sbjct: 307 VKAPIVGRVSMDMLTVDLSDIPDVKPGD 334


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 32 PSPPLGHSCAVTSATTLRHNWPHKYIVRRPIT 63
          P+   G S + TSA++ R++ P K  +  PIT
Sbjct: 68 PTVRPGSSMSRTSASSFRYSSPQKSSIDTPIT 99


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
          Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 43 TSATTLRHNWPHKYIVRRPITGRRTKCATPTDQLDLPDA 81
          TS    RH   H+ +   P    R+KC  PT++ +   A
Sbjct: 59 TSKPKSRHAHFHETVHENPSEYSRSKCKQPTNEKEYDKA 97


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 11  TGASCPGGGEH-LIDAPRAQRA 31
           +G  CPG GEH +++  R Q+A
Sbjct: 168 SGHDCPGEGEHKIMEYIRTQKA 189


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 64   GRRTKCATPTDQLDLPDAAAGDARLLEWRNDNQL 97
            G R K +TP + + LP  A GD  +   +N   L
Sbjct: 2091 GSRQKESTPINDVILPPWAKGDPAIFVQKNREAL 2124


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,368
Number of Sequences: 5004
Number of extensions: 15490
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)