Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002155-TA|BGIBMGA002155-PA|undefined
(114 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0173 + 21502765-21504216 32 0.12
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 31 0.29
08_01_0426 - 3757110-3758405 29 0.88
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 1.5
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587... 28 2.0
05_02_0001 - 5472040-5472424,5472560-5472972 27 2.7
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 27 2.7
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 27 3.6
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 27 4.7
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 26 6.2
11_01_0311 + 2322511-2323527 26 6.2
02_02_0737 - 13529180-13529543,13530661-13531178 26 6.2
01_06_0219 + 27649784-27650959 26 6.2
11_01_0722 + 5961348-5961483,5961633-5961901 26 8.2
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721... 26 8.2
>03_05_0173 + 21502765-21504216
Length = 483
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 10 QTGASCPGGGEHLIDAPRAQR-------APSPPLGHSCAVTSATTLRHNWPHKYIVRRPI 62
Q A+ P GEHL+ + Q+ A +PPL H+ T+ LR +++ RP
Sbjct: 186 QLMANAPNAGEHLLPEQQKQQPVTAAKPANAPPLQHAANATNPAVLRRQRQRQWVRLRPP 245
Query: 63 T 63
T
Sbjct: 246 T 246
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 17 GGGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRP 61
GGG L+ PR Q A P G + A S T R P + RRP
Sbjct: 1438 GGGAGLLRQPRRQLAEGTPRGTARARVSPPTYRRPPPGPHGTRRP 1482
>08_01_0426 - 3757110-3758405
Length = 431
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 18 GGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRPITG 64
G + ID PRA A SPP V + T N KY+VR P +G
Sbjct: 248 GSVYAIDVPRAAAASSPPATRE--VMRSVTNADN-GSKYLVRVPCSG 291
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 18 GGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHN-WPHKYIVR----RPITGRRTKCAT 71
GG +D P A++A P + + A++S + R W H I +P+ R C T
Sbjct: 106 GGTGSLDEPEAEQAERPSINAAIAISSGSKKRSKAWGHFDITEEENGKPVKARCIHCHT 164
>02_05_1120 +
34257504-34258294,34258483-34258571,34258616-34258713,
34259269-34259292,34259314-34259404,34259761-34259813,
34259933-34260151
Length = 454
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 6 ARAAQTGASCPGGGEHLIDAPRAQRAPSPPLG-HSCAVTSATTLRHNWPHKYIVRRPITG 64
AR A G+S G L+D R+ +P+ P G +S +S N P R+P
Sbjct: 113 ARGAPPGSSPDGAAPSLLDLVRSTSSPTSPQGPNSGHFSSLAESLRNLPSG---RQPQQR 169
Query: 65 RRTKCATP 72
R+ + TP
Sbjct: 170 RQPRSTTP 177
>05_02_0001 - 5472040-5472424,5472560-5472972
Length = 265
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 17 GGGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHN 51
G GE L AP A APSPP + +V +A HN
Sbjct: 32 GVGEQLATAPPAAPAPSPPPPYCGSVRTAVE-AHN 65
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 66 RTKCATPTDQLDLPDAAAGDARLLEWR 92
RT TPT LP + A ARLL WR
Sbjct: 15 RTPAMTPT--ATLPSSCASPARLLRWR 39
>03_02_0078 +
5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 17 GGGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHN 51
GG EH++D+ +++R +P + S +S+++++ N
Sbjct: 336 GGKEHIVDSIKSKREINPAVFKSNPTSSSSSIKPN 370
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 9 AQTGASCPGGGEHLIDAPRAQRAPSPP 35
A T A+ GGG PR R P PP
Sbjct: 78 ASTAAAAQGGGSAASRPPRPPRPPLPP 104
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 38 HSCAVTSATTLRHNWPHKYIV 58
HSC + + +R N PH Y++
Sbjct: 301 HSCLIQQGSVMRTNIPHGYVM 321
>11_01_0311 + 2322511-2323527
Length = 338
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 13 ASCPGGGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATP 72
ASC G G + A APS +C+ +S+TT + P + ++ R T A P
Sbjct: 17 ASCIGDGAVRVADVAACTAPSSTRVSTCSSSSSTTASSSSPTLSVT---VSYRATLLAAP 73
Query: 73 TDQLDL 78
L L
Sbjct: 74 APPLQL 79
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 38 HSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATP 72
HSC V + ++ K +V P+ GRR ++P
Sbjct: 47 HSCIVVHTLKIDDHYQTKAVVSAPLQGRRPAESSP 81
>01_06_0219 + 27649784-27650959
Length = 391
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 20 EHLIDAPRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTK 68
E L+ APRA R P+ L +CA ++ P +I R + R K
Sbjct: 218 EVLVFAPRAGRDPNALLEMTCASYQMRRRANHLPASFIATRYLVESRGK 266
>11_01_0722 + 5961348-5961483,5961633-5961901
Length = 134
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 26 PRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATPTDQLDLPDAA 82
P A AP PL S A AT P G ++ A P QLD PD++
Sbjct: 33 PAATAAPCDPLCISGAAAGAT------PEAMAAAAMAGGNESESALPPRQLDRPDSS 83
>01_05_0429 +
22070636-22070662,22071490-22071577,22071908-22072168,
22072925-22073161,22073251-22073375,22074093-22074569,
22074655-22075569
Length = 709
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 20 EHLIDAPR-AQRAPSPPLGHSCAVTSAT 46
EH ++APR APS P + A +AT
Sbjct: 662 EHAVEAPRKTPAAPSSPAASAAAAAAAT 689
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,903
Number of Sequences: 37544
Number of extensions: 143497
Number of successful extensions: 451
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 15
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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