GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002155-TA|BGIBMGA002155-PA|undefined
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   2.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    19   9.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 23   IDAPRAQRAPS-PPLGHSCAVTSATTLRHNW 52
            I A  A+  P  PP   +C   +A T+R +W
Sbjct: 1091 IKAYTAEGVPEQPPDKATCTTLTAQTIRVSW 1121



 Score = 20.2 bits (40), Expect = 5.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 42   VTSATTLRHNWPHKYIVRRPITGRRTKCATPTD 74
            VT+ATT+    P K +   P      K A+  D
Sbjct: 1282 VTAATTIGEGQPSKKVTVSPSASVPAKIASFDD 1314


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 20  EHLIDAPRAQRAPSPP 35
           E +   P + +AP+PP
Sbjct: 398 EEVTQKPSSTKAPAPP 413


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,138
Number of Sequences: 317
Number of extensions: 858
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)