GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002155-TA|BGIBMGA002155-PA|undefined
         (114 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36851| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   26   6.4  
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)            26   6.4  
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)            26   8.5  
SB_40508| Best HMM Match : FHA (HMM E-Value=0.052)                     26   8.5  
SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_36851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 50  HNWPHKYIVRRPITGRRTKCATPTDQLDL 78
           H +P K I+   +  R+TK  TP D LDL
Sbjct: 95  HRFPGKKILSEGMAFRKTKVLTPLDCLDL 123


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 17  GGGEHLIDAPRAQRAPSPPLGHSCAVTSATTLRHNW 52
           G  +H+      Q AP PP G +   TS ++LR +W
Sbjct: 216 GSVKHINRLWTLQAAPPPPRGLTVRFTSESSLRADW 251


>SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 9   AQTGASCPGGGEHLIDAPRAQRAPSPPLGHSCAVTSA 45
           A+ G+S   G + LID P + +A   P    C+++ A
Sbjct: 192 ARKGSSITHGTQRLIDYPWSAKAHRLPTARKCSISHA 228


>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 8   AAQTGASCPGGGEHLIDAPRAQRA 31
           A + G   P GG  L+DAPR  R+
Sbjct: 413 APRGGRDAPRGGRSLLDAPRGGRS 436


>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
          Length = 252

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 41  AVTSATTLRHNWPHKYIVRRPITGRRTKCATP 72
           +V S   +RH + H+Y    P +G  T  ATP
Sbjct: 84  SVNSTNIIRHYYWHRYAQPPPSSGITTGTATP 115


>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
          Length = 218

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 42  VTSATTLRHNWPHKYIVRRPITGRRTKCATP 72
           V S   +RH + H+Y    P +G  T  ATP
Sbjct: 152 VNSTNIIRHYYWHRYAQPPPSSGITTGTATP 182


>SB_40508| Best HMM Match : FHA (HMM E-Value=0.052)
          Length = 272

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 25  APRAQRAP-SPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTKCATPT 73
           +P+  R+P   PL  +     +  L+H    K+   R     + KC TPT
Sbjct: 89  SPKTDRSPLKKPLFEALIPDLSPLLKHQTSSKHTTPRSSPSGQHKCITPT 138


>SB_19020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 26  PRAQRAPSPPLGHSCAVTSATTLRHNWPHKYIVRRPITGRRTK 68
           PR +  P+P LG    + S+  +R +   K I RRP+    T+
Sbjct: 231 PRGETTPNPHLGDRSGLRSSLAVRMDHDIKSI-RRPLAPHTTQ 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,848,112
Number of Sequences: 59808
Number of extensions: 141175
Number of successful extensions: 264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 11
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)