GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002154-TA|BGIBMGA002154-PA|undefined
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.5  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 123 GSNAILADEYAESAAEGGGSLPSFNTRFGGAFACATSRPSTVYG 166
           GS  +LAD + + ++   G+ PS   +  G+F    ++P  + G
Sbjct: 360 GSRVVLADTFEDYSSTSSGNPPSSMEKVSGSF--TGTKPEQIIG 401


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 93  FNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAILADEYAESAAEGGGSLPSFNTRFGG 152
           F+SAAP  T+ + LS+   +  +S  SPS  S++ L      +++    S  S +T    
Sbjct: 197 FSSAAPTSTSSSYLSSSSVV--SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254

Query: 153 AFACATSRPSTVYGAPALASNA 174
           + + ++S  S+   + ++ S++
Sbjct: 255 SSSSSSSTASSSSSSSSIISSS 276


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,415
Number of Sequences: 5004
Number of extensions: 27063
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 2,362,478
effective HSP length: 70
effective length of query: 135
effective length of database: 2,012,198
effective search space: 271646730
effective search space used: 271646730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)