GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002154-TA|BGIBMGA002154-PA|undefined
         (205 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      31   0.67 
SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 29   2.1  
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)              29   2.1  
SB_47221| Best HMM Match : Pox_A32 (HMM E-Value=0.04)                  29   2.7  
SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)                 27   8.3  

>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 14  GCRIVGGITSSGPVINEGRRLVTVPSESESVGGTCGAACG 53
           GC+ +GG T  G ++  G+ L+ VP     VGG CG+  G
Sbjct: 353 GCQFIGGTT--GTIV--GQVLIPVPVVGAIVGGFCGSLIG 388


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 102 NGADLSAQPQLWTASGGSPSYGSNAILADEYAESAAEGGGSLPSFNT-RFGGAFACATSR 160
           +GA L++ P+  T SG     GS+   +D        GGGS  S  + R  G+ + ++SR
Sbjct: 425 SGASLASSPR-GTTSGVYSISGSDDSASDSDGGGGGGGGGSGGSSPSHRSSGSSSSSSSR 483

Query: 161 PSTVYGAPAL 170
            S+  G+PA+
Sbjct: 484 RSSPSGSPAI 493


>SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 1  MTHAALVSGSARLGCRIVGGITSSGPVINEG 31
          +T   L S + RLGC +V G+TSS   I EG
Sbjct: 20 LTAPFLSSPNGRLGCALVNGMTSSLGAIPEG 50


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 95  SAAPYFTNGADLSAQPQLWTASGGSPSYGSNAILADEYAESAAEGGGSLPSFNT 148
           ++ P  T     SA P++ TA+ GSPS  + ++   + +    +   +LP+  T
Sbjct: 878 TSGPTTTTPISTSAAPEITTANPGSPSTTTKSVTTPQTSPKTPQTPATLPTTQT 931


>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
          Length = 1617

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 118 GSPSYGSNAILADEYAESAAEGGGSLPSFNTRFGGAFACATSRPSTVYGAPALASNAYAH 177
           GS S   N  +     +  A G   + SF  ++G +   + SRPS      A  S +   
Sbjct: 542 GSSSPSKNVAIVRPEVQKTAAGSSKISSFTKKYGTSSRSSNSRPSLQETHKAPKSRSSVD 601

Query: 178 QFASPQKMQP 187
              S + M P
Sbjct: 602 DSTSGRTMTP 611


>SB_47221| Best HMM Match : Pox_A32 (HMM E-Value=0.04)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 88  YTRCAFNSAAPYFTNGADLSAQPQL-WTASGGSPSYGSNAILADEYAESAAEGGGS-LPS 145
           YT    +  A     GA+LS +    +T +  +  + +  +++DEY ES  EGG + LP+
Sbjct: 147 YTPSKADMKAILHDYGAELSEEKMKEYTKALKTKKFSNRTMMSDEYFESLLEGGAADLPA 206

Query: 146 FNT 148
             T
Sbjct: 207 AET 209


>SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 88  YTRCAFNSAAPYFTNGADLSAQPQLWTASG-GSPSYGSNAILADEYAESAAEGGGSLPS 145
           YT    +  A     GA+LS +    +     +  + +  ++ DE  ES  EGGGSLP+
Sbjct: 147 YTPSKADMKAILHDYGAELSEEKMKESMKALKTKKFLNRTMMCDECFESFLEGGGSLPT 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,021,954
Number of Sequences: 59808
Number of extensions: 222213
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 7
length of query: 205
length of database: 16,821,457
effective HSP length: 79
effective length of query: 126
effective length of database: 12,096,625
effective search space: 1524174750
effective search space used: 1524174750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)