GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002154-TA|BGIBMGA002154-PA|undefined
         (205 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001861-1|AAH01861.2|  267|Homo sapiens testis expressed 101 pr...    31   2.8  
AY359077-1|AAQ89436.1|  249|Homo sapiens GTPR867 protein.              31   2.8  
AY014285-1|AAK27310.1|  249|Homo sapiens putative cell surface r...    31   2.8  
AF353396-1|AAK38662.1|  249|Homo sapiens scleroderma-associated ...    31   2.8  
AF241268-1|AAK28327.1|  267|Homo sapiens scleroderma-associated ...    31   2.8  
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    29   8.5  

>BC001861-1|AAH01861.2|  267|Homo sapiens testis expressed 101
           protein.
          Length = 267

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 10  SARLGCRIVGGITSSGPV-INEG--RRLVTVPSESESVGGTC 48
           +A +GCR++ GI + GP+ + E    +L+T P ++E+ G TC
Sbjct: 204 TAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN-GATC 244


>AY359077-1|AAQ89436.1|  249|Homo sapiens GTPR867 protein.
          Length = 249

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 10  SARLGCRIVGGITSSGPV-INEG--RRLVTVPSESESVGGTC 48
           +A +GCR++ GI + GP+ + E    +L+T P ++E+ G TC
Sbjct: 186 TAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN-GATC 226


>AY014285-1|AAK27310.1|  249|Homo sapiens putative cell surface
           receptor NYD-SP8 protein.
          Length = 249

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 10  SARLGCRIVGGITSSGPV-INEG--RRLVTVPSESESVGGTC 48
           +A +GCR++ GI + GP+ + E    +L+T P ++E+ G TC
Sbjct: 186 TAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN-GATC 226


>AF353396-1|AAK38662.1|  249|Homo sapiens scleroderma-associated
           autoantigen protein.
          Length = 249

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 10  SARLGCRIVGGITSSGPV-INEG--RRLVTVPSESESVGGTC 48
           +A +GCR++ GI + GP+ + E    +L+T P ++E+ G TC
Sbjct: 186 TAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN-GATC 226


>AF241268-1|AAK28327.1|  267|Homo sapiens scleroderma-associated
           autoantigen protein.
          Length = 267

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 4/42 (9%)

Query: 10  SARLGCRIVGGITSSGPV-INEG--RRLVTVPSESESVGGTC 48
           +A +GCR++ GI + GP+ + E    +L+T P ++E+ G TC
Sbjct: 204 TAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN-GATC 244


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 28/171 (16%), Positives = 69/171 (40%), Gaps = 3/171 (1%)

Query: 22  TSSGPVINEGRRLVTVPSESESVGGTCGA--ACGLHFRHSAARMQTRIGTQHXXXXXXXX 79
           +SS  +++      ++PS S S      +  +      HS++   +   T          
Sbjct: 40  SSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSS 99

Query: 80  XXXXXXXVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAILADEYAESAAEG 139
                    +  + +S++P  ++ +  S+ P   ++S  S S  S++  +   +  ++  
Sbjct: 100 SSSSPSSSNSSSSSSSSSPSSSSSSS-SSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 158

Query: 140 GGSLPSFNTRFGGAFACATSRPSTVYGAPALASNAYAHQFASPQKMQPQPS 190
             S  S ++    + + + S PS+   +P+ +S++ +   +SP      PS
Sbjct: 159 SSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPS 209


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,964,156
Number of Sequences: 224733
Number of extensions: 1097281
Number of successful extensions: 2144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 9
length of query: 205
length of database: 73,234,838
effective HSP length: 87
effective length of query: 118
effective length of database: 53,683,067
effective search space: 6334601906
effective search space used: 6334601906
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)