Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002153-TA|BGIBMGA002153-PA|undefined
         (174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    28   0.67 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    27   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   6.2  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 61  SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTD 95
           S Q L+  +A+DM  + HLD A F   TP   + D
Sbjct: 175 SNQALKSLYAKDMHLFRHLDPADFPYSTPDIFADD 209


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 60 RSYQELRPAHARDMQPYAHLD 80
          +SY ELR AH   + PY H +
Sbjct: 69 KSYLELRVAHVEHLNPYFHAE 89


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 61   SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAP 120
            SY    P+++     Y+    + + P +P  ++T   Y   SP  SP+      Y P +P
Sbjct: 1577 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSATSPSYSPTSPSYSPT---SPSYSPTSP 1632


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,858
Number of Sequences: 5004
Number of extensions: 23696
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 2,362,478
effective HSP length: 68
effective length of query: 106
effective length of database: 2,022,206
effective search space: 214353836
effective search space used: 214353836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)