Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002153-TA|BGIBMGA002153-PA|undefined
(174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1292 + 25943074-25943643 30 1.2
04_03_1017 + 21747044-21748051 30 1.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 1.6
01_05_0490 + 22672241-22674679 28 3.6
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 4.8
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 4.8
03_02_0342 - 7645323-7645909,7646323-7646491 28 4.8
09_04_0624 + 19041663-19043792 27 8.3
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 27 8.3
>08_02_1292 + 25943074-25943643
Length = 189
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 60 RSYQELRPAHARDM-QPYAH-LDDALFKP----PTPGAASTDGVYLRRSPELSPSP 109
R L P H R + + YAH + LF+P P P AA+ V+ +P ++P+P
Sbjct: 87 RRRHALTPGHVRAIAERYAHDVGSVLFRPLPPPPPPVAAAAVPVFAAPAPPMAPAP 142
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 86 PPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAPLHY 123
PP P AAS D Y +P SP P + + P P Y
Sbjct: 268 PPPPRAASPD--YTPSTPPSSPLPSAAESFTVPPPRRY 303
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 61 SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPER---RDDYRP 117
SY P+++ Y+ A + P +PG + T Y SP +PS + Y P
Sbjct: 1765 SYSPTSPSYSPTSSAYSPTSPA-YSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSP 1823
Query: 118 PAPLHY 123
+P +Y
Sbjct: 1824 SSPNYY 1829
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 69 HARDMQPYAHLDDALFKPPTPGA-ASTDGVYLRRSPELSPSPERRDDYRPPAP 120
H + + HL D + P+ A AS D +P +P+P RR PP P
Sbjct: 564 HHHNHHHHHHLSDGHYSSPSSDASASPDSTVRTTNP--APAPPRRPPPPPPPP 614
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 61 SYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSP-SPERRDDYRPPA 119
SY P+++ Y+ A + P +PG + T Y SP SP SP +
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPA-YSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYS 1754
Query: 120 PLH 122
P H
Sbjct: 1755 PSH 1757
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 61 SYQELRPAHARDMQPYA-HLDDALFKPPTPGAASTDG 96
S Q+ R AHA A L D L PP PG++S G
Sbjct: 342 SEQQTRYAHALSQSSLAAKLGDELLFPPLPGSSSNRG 378
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 86 PPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAP 120
PP P Y +P L+P P Y PPAP
Sbjct: 174 PPPPPPRPPAPEYKPPTPTLTPIPTPEPSYGPPAP 208
>09_04_0624 + 19041663-19043792
Length = 709
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 66 RPAH-ARDM--QPYAHLDDALFKPPTPGAASTDGVYLRRSP 103
RP H A D P+ L DA F PP PG + G + +P
Sbjct: 22 RPPHDAADAASHPFLQLLDANFNPPPPGPPAAFGSKTKATP 62
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 103 PELSPSPERRDDYRPPAP 120
P+ SP+P RD + PPAP
Sbjct: 5 PDSSPAPPHRDWFFPPAP 22
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,905,851
Number of Sequences: 37544
Number of extensions: 184909
Number of successful extensions: 583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 14,793,348
effective HSP length: 77
effective length of query: 97
effective length of database: 11,902,460
effective search space: 1154538620
effective search space used: 1154538620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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