GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002153-TA|BGIBMGA002153-PA|undefined
         (174 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical ...    28   3.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical
           protein C17E7.4 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 74  QPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPA 119
           QP A   D    PPT    +T    LR+ P+  P    RDD+   A
Sbjct: 39  QPTARFADDCMLPPTAAYHTTSAPKLRKGPQSCPG--GRDDFNAAA 82


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 100 RRSPELSPSPERRDDYRPPAP 120
           RR P   PSP+RR    PP+P
Sbjct: 158 RRPPMTPPSPQRRPPRTPPSP 178



 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 86  PPTPGAASTDGVYLRRSPELSPSPERRDDYR-PPAPL 121
           PP      T     RR P   PSPE R+  R PP+P+
Sbjct: 155 PPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPI 191


>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 64  ELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELSPSPERRDD 114
           EL P    ++ P +  D  + KPP     S     +   P L P PE R D
Sbjct: 197 ELEPEGV-EVTPESFPDLQIMKPPPVSPPSNISEQIHHQPPLVPQPESRPD 246


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 86  PPTPGAASTDGVYLRRSPELSPSPERRDDYRPPA 119
           P TPG A   G    +     P P+R+DD  PP+
Sbjct: 255 PGTPGQAGKPGAP-GKDANYCPCPQRQDDRTPPS 287


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 85   KPPTPGAASTDGVYLRRSPELSPSPERRDDYRPPAP 120
            +P T G A       RR  E+ P   R  +  PPAP
Sbjct: 1010 RPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAP 1045


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 148 AECEPLRITLTTPPQTSS 165
           AECE LR+  T PP  SS
Sbjct: 118 AECEELRVLQTVPPLVSS 135


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 148 AECEPLRITLTTPPQTSS 165
           AECE LR+  T PP  SS
Sbjct: 118 AECEELRVLQTVPPLVSS 135


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,771
Number of Sequences: 27539
Number of extensions: 143667
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 8
length of query: 174
length of database: 12,573,161
effective HSP length: 77
effective length of query: 97
effective length of database: 10,452,658
effective search space: 1013907826
effective search space used: 1013907826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)