GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002152-TA|BGIBMGA002152-PA|IPR001876|Zinc finger,
RanBP2-type, IPR013913|Nucleoporin Nup153-like
         (1251 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            31   0.14 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    30   0.33 
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    30   0.33 
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    30   0.44 
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          29   0.58 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    29   1.0  
AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein ...    29   1.0  
AF457553-1|AAL68783.1|  178|Anopheles gambiae mucin-like protein...    28   1.3  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    28   1.8  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    27   4.1  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   4.1  
Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein...    26   5.4  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   9.4  
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    25   9.4  

>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 10  VHKDRNPSFKASLLGSPFYSGRT--VYGGASSSYMNQPNIKQRKVAHINESPANETVTMS 67
           +HK     + A  +   F    T  V GG S +++++ N  QR+V HI    A + V  S
Sbjct: 554 IHKSTAEKYLAKCVPGTFLLRFTDSVLGGISIAWVHESNDGQRQVLHIQPFTAKDLVVRS 613

Query: 68  NSARKIMDLLE 78
             A +I DL E
Sbjct: 614 -LANRICDLGE 623


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 327 KESFAQKNIESSKDSVSAWSTKENFIQKSTDKDT 360
           KE  AQ+ +E     +  W+TKEN +++  D+ T
Sbjct: 907 KEKEAQEKLEEDGKRMEKWATKENMLRQKIDECT 940


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 402 CGVTRPSSVVGKVTKCSCKLSDTQAHIDKCETCEKSEADAISIKSNEITWKCDDCRALNE 461
           C V     V G++T+C   L   + HI    TC   +     ++  + T K   C   NE
Sbjct: 451 CSVHEAPKVSGQLTRCFRCLE--RGHI--AATCTGEDRSKRCLRCGDQTHKASGCT--NE 504

Query: 462 ANIEKCVCCGSAH 474
               KC+ CG AH
Sbjct: 505 V---KCMLCGGAH 514


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 103 NSTANTIKPAAYRTQELHIPSIAS----ILRVKQKSRLMDSTSAARQLIASHSSAAPEFS 158
           NST +     +++ Q+ H PS  S    + R   KSR + + +     +   S+++P   
Sbjct: 820 NSTNSAYSMQSHQQQQHHQPSAVSNSNGLARHNSKSRRLITATGGMLKMPPSSNSSPSSY 879

Query: 159 PYPTTITQKELAVNEQNSNL 178
           P P  +     + N  +SNL
Sbjct: 880 PSPDVVISGLASNNSSSSNL 899



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 1083 GTSNNTSNLFAASTTANPLQKPAAFNFGAPSSLSPFNNNNTSSVFGSSTQSTQNIFGIAT 1142
            G S N +N    +   N  Q+P+  N G   +    NNNN ++  GS+T +T N    + 
Sbjct: 70   GNSGNNNN----NGVGNHQQQPSPVNEGTGKTN---NNNNNNNNNGSNTGATVN----SG 118

Query: 1143 QQNPASQPNLFPSPAQNQNAPNIFGSPVPPSNSVGLFGTANVGSTPTFGNQNQSMPSLT 1201
              N A   +   + + + +A     +P  P N  G  G+ N  ++ +  + N  + S T
Sbjct: 119  SSNAALSNSSVLNGSNSGSATTTTTTPTNPGNGNG--GSNNNNNSNSSSSCNNHVSSNT 175



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 1066 TVSSGFFGQSTQNENLWGTSNNTSNLFAASTTANPLQKPAAFNFGAPSSLSPFNNNNTSS 1125
            TV+SG    +  N ++   SN+ S     +T  NP       N    S+ S   NN+ SS
Sbjct: 114  TVNSGSSNAALSNSSVLNGSNSGSATTTTTTPTNPGNGNGGSNNNNNSNSSSSCNNHVSS 173


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 880 SIASPVFQSPTPSSTLFQKPENSTSSIMFPASDVSVASTVSLFQNSDNIITTTSQPATAN 939
           S  SP   S +PSS       NS +S M P S  S  S     QN    +  +S   T N
Sbjct: 63  SALSPSSSSASPSSPSSVASPNSRASNMSPESSASDQSAAYTLQN----LNLSSSAGTMN 118

Query: 940 SPVFGF 945
            P  G+
Sbjct: 119 YPGMGY 124


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
            binding protein protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 1099 NPLQKPAAFNFGAPSSLSPFNNN-NTSSVFGSSTQSTQNIFGIATQQNPASQPNLFPSPA 1157
            +P Q P+    G+  SLSP N + N S   G+   S Q       QQ    Q  L P P 
Sbjct: 446  SPTQSPSP---GSQQSLSPANTDENFSYRPGAKPNSGQQ----QQQQQQQQQYKLQPPPG 498

Query: 1158 QNQNAPNIFGSPVP 1171
               NAPN   +  P
Sbjct: 499  GRPNAPNPSSAVTP 512


>AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein
            protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 1089 SNLFAASTTANPLQKPAAFNFGAPSSLSPFNNNNTSSV--FGSSTQSTQNIFGIATQQNP 1146
            S L  A   A P    +    G+ ++ +  ++NN++ V  FG ++QS  N+ G    Q P
Sbjct: 9    STLSVAMVFALPAHHHSRGGDGSSANSTGNSDNNSAGVPDFGFNSQS--NVPGFGNGQQP 66

Query: 1147 ASQP-----NLFPSPAQNQNAPNIFGSPVPP---SNSVGLFGTANVG-STPTFG 1191
              Q        FP   Q Q+    FG+ + P    N  G  G A  G   P FG
Sbjct: 67   GQQQQGQQGQGFPFFGQGQSGFPSFGNRLQPFFGQNQQGQDGDAQQGRGVPFFG 120


>AF457553-1|AAL68783.1|  178|Anopheles gambiae mucin-like protein
           protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 761 NKPAVVTALPTVSVNENKNTTTNSLHTQSGE-KSEKALLNNTFTFSAGSKNIVTNMFKSP 819
           ++     A  T   +++ NTTT +  T + E ++  +  N+T T +A +    +      
Sbjct: 83  SEATTTAAASTTQASDSDNTTTTAEATTTTEAQTTSSSDNSTTTEAAATTTAASETTADS 142

Query: 820 STVATTSISFALPVQ 834
           S+  TTS+   L  Q
Sbjct: 143 SSTGTTSVEAGLRAQ 157


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
            homeotic protein protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 1110 GAPSSLSPFNNNNTSSVFGSSTQSTQNIFGIATQQNPASQPNLFPSPAQNQNAPNIFGSP 1169
            G  +  +  NNNN +S       ST +            +P + P  +      ++  S 
Sbjct: 132  GPSTGTNVINNNNNNSTTSPQDLSTASGGSSGANDGNNGRPEISPKLSPGSVVESVSRSL 191

Query: 1170 VPPSNSVGLFGTANVGSTPTFGNQNQ-SMPSLTPE 1203
               + S  +  ++   +T    N+NQ ++P  +PE
Sbjct: 192  KSGNPSTAVSSSSTNNNTSNISNRNQVNLPLASPE 226


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
            transcription factor FRU-MB protein.
          Length = 759

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 897  QKPENSTSSIMFPASDVSVA--STVSLFQNSDNIITTTSQPATANSPVFGFTANSFKPAS 954
            +K EN  S  M   +  + A  S  +   NS      ++  A ANS    F +  F  A+
Sbjct: 555  RKFENMLSPTMASQAAAAAAAISAAAAAANSSFKPDFSTAAAVANS----FKSEQFSSAA 610

Query: 955  TAVEKPKFNFTLGKTENFTFENKFSPIGNNRNSTSSFALPTSTIIPTVNGLTGNALSGG 1013
             AV     N+ LG     TF++ F PI N+  + ++ A+  +       G  G    GG
Sbjct: 611  AAVA----NYALG-----TFKSDFPPIPNSSAAAAAAAVAAAVAASVSPGSGGGGGGGG 660


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 99  NESINSTANTIKPAAYRTQELHIPSIASILRVKQKSRLMDSTSAARQLIASHSSAAPEFS 158
           N+S   T N +   A  T  L   +   +  ++Q + +    + A  L+  +  A P  +
Sbjct: 518 NDSKTGTGNLLLKTAGATGHLSCCNSLFLNDLQQAAAVTTGATTADLLLGDNGVAVPLNN 577

Query: 159 PYPTTITQKELAVNEQNSNLTTKV---KTRLTRPNR 191
             PT +    + +N  ++  T      K   T PNR
Sbjct: 578 NLPTNVLPSGMIINTTDTGTTVPAGGGKGDKTGPNR 613


>Y08163-1|CAA69355.1|  192|Anopheles gambiae hypothetical protein
           protein.
          Length = 192

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 327 KESFAQKNIESSKDSVSAWSTKENFIQKSTDKDTTWITKETPVQ 370
           ++ + +  +++S    + W    N    +T+K  TWIT + PVQ
Sbjct: 107 EQKYLESLLKASSTGSNYWIGATNIGASNTNK-LTWITTDLPVQ 149


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 654 KKTEESSAALKTNPEVSESNTLEKIPMFTFTLPSKKSEDKIDD 696
           ++ E+  AAL+ + E+   N LE I M        + E +I+D
Sbjct: 287 RQQEQDRAALEASKEMRRKNALEAIRMAEDRRTRLRRESEIED 329


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 655 KTEESSAALKTNPEVSESNTLEKIPMFTFTLPSKKSEDKIDDVKGNIDATKVKFSFGIPK 714
           K +  + A +   +    +TL K P FT     +KS  K    K     +++K  F   +
Sbjct: 97  KKQAPAKAKEPKAKAERQSTLRKRPKFTVIDSGRKSFRKSTAAKTAATQSRLKQRFEAER 156

Query: 715 AST---ASEVGAGNSHGEKDKQEEVTKVNVNT-SMFENPKLGNDLLKPSDNK---PAV-- 765
             T    +E          ++ E   + N+ +   F   +L    ++P++ K   P +  
Sbjct: 157 KRTRVIRTEEYIPTQEELLEEAEITERENIKSLERFRRMELEKQKIRPTNKKFTGPTIRY 216

Query: 766 -VTALPTVSVNENKNTTTNSLHTQSGEKSE 794
             TA+P +    + NT  + L     +++E
Sbjct: 217 FSTAMPIIEEVYDSNTEVDPLSISDPKEAE 246


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.309    0.123    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,548
Number of Sequences: 2123
Number of extensions: 51894
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 30
length of query: 1251
length of database: 516,269
effective HSP length: 72
effective length of query: 1179
effective length of database: 363,413
effective search space: 428463927
effective search space used: 428463927
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)