Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002152-TA|BGIBMGA002152-PA|IPR001876|Zinc finger,
RanBP2-type, IPR013913|Nucleoporin Nup153-like
(1251 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 30 0.10
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 27 0.96
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 27 1.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 26 1.7
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 26 1.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 25 2.9
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 25 5.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 25 5.1
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 24 6.7
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 24 6.7
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 24 8.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 24 8.9
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 24 8.9
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 30.3 bits (65), Expect = 0.10
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 300 TFGSPERGVDKVIASNKQNDFPVVGATKESFAQKNIESSKDSVSAWSTKEN 350
TFGS ++ ++ I ++ +D VVG+ ++S + IE S++SVS S KEN
Sbjct: 268 TFGS-KKTMELHIKTH--SDSSVVGSPRDSPIEPEIEISQNSVSTGSDKEN 315
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 27.1 bits (57), Expect = 0.96
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 599 SCLVRNNNEKTSCVCCGAEP-----SNNSVPEKKSFNFGINPNTSFKFGINPVEQQVNL- 652
S + RN+N S CG P SN ++P+ S I V + ++
Sbjct: 32 SSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKTILAVNAEADIT 91
Query: 653 VKKTEESSAALKTNPEVSESNTLEKIP-MFTFTLPSKKSEDKIDDVKGNI 701
+K A+ N V + LEK P + T P + + D + DV+ +
Sbjct: 92 LKNAGTPPEAVSYNVAVPTKSILEKKPELVDATDPGEHNGDTVTDVEAGL 141
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 143 ARQLIASHSSAAPEFSPYPTTITQKELAVNEQNSNLTTKVKTRLTRPN 190
A +L A S A+P PY T K ++ + TTKV TR +P+
Sbjct: 116 AEKLAAPSSQASPTSIPYATRAEIKTESIQPE----TTKVDTREVQPH 159
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 26.2 bits (55), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1088 TSNLFAASTTANPLQKPAAFNFGAPSSLSPFNNNNTSSVFGSSTQSTQNI 1137
TS A +P+ A G+ +LS +NN TSS +T +T ++
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSASRENTSNTTSM 631
Score = 23.8 bits (49), Expect = 8.9
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 131 KQKSRLMDSTSAARQLIASHSSAAPEFSPYPTTITQKELAVNEQNSNLTTKVKTRLTRP- 189
K+KS+ + + +A + ++ PE Y + K + E+ ++TT T P
Sbjct: 75 KKKSKTILAVNAEADITLKNAGTPPEAVSYNVAVPTKSIL--EKKPDVTTVELVDATDPG 132
Query: 190 -NRGDKFDDV 198
+ GD DV
Sbjct: 133 EHNGDTVTDV 142
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 26.2 bits (55), Expect = 1.7
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 700 NIDATKVKFSFGIPKASTASEVGAGNSHGEKDKQEEVTKVNVNTSMFENPKLGNDLLKPS 759
N DAT FS G+ +S+V H E E+ K N + S
Sbjct: 203 NNDATPTDFSMGVKNNHVSSKVEGNGVHEENSPLEDNIKCEPLELTGGNSGNAAGNNEDS 262
Query: 760 DNKPAVVTALPTVSVNENKNTTTNSLHTQS 789
+ A + P S + N++ S HT +
Sbjct: 263 SDSGAAASDRPPASASSNEH-EAESEHTST 291
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 25.4 bits (53), Expect = 2.9
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 909 PASDVSVASTVSLFQNSDNIITTTSQPATANSPVFGFTANSFKPASTAVEKPKFNFTLGK 968
P + + A + + ++ I + ++ + A S F ANS S + + + + G
Sbjct: 530 PENGEAFAQNLYAMKMNETYINSGNKISLATSKSF-IKANSQTEVSNSKKLDRLDSLRGS 588
Query: 969 TENFTFENKFSPIGNNRNSTSSFALPTS 996
T + E+ F P+ N R + FAL +S
Sbjct: 589 TTDSQTEDNFGPLSNVRFAV--FALGSS 614
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 24.6 bits (51), Expect = 5.1
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 219 FTLGKPFSSTPNLISTSTPAASVNKLV----VAQNTNPLSGTTTSSSTAFLSKPDLVISS 274
+ PFS + T A + N++V ++ + L + T S + SS
Sbjct: 323 YIYNNPFSDVEERRVSKT-AMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSS 381
Query: 275 TEFKFSSPVKVTTENSTQSAILPKFTFGSPERGVDKVIASNKQNDFPVVGATKESFAQ-K 333
E F P K T E++ Q+++LP F G + + K S K + V+ A KE Q
Sbjct: 382 EENDFWQP-KPTLEDAPQNSLLPNFV-GYKGKHIGK---SGKVD---VINAAKELIFQIA 433
Query: 334 NIESSKDSVSAWSTKENFI 352
N ++ +T E F+
Sbjct: 434 NELEDASNIPVHATLEKFM 452
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 24.6 bits (51), Expect = 5.1
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 645 PVEQQVNLVKKTEESSAALKTNPEVSESNTLEKIPMFTFTLPSKKSEDK-IDD----VKG 699
PV + N V K + ++ +T P+ P+ + KKSE+K I+D +
Sbjct: 770 PVIKPAN-VNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQ 828
Query: 700 NIDATKVKFSFGIPKASTASEVG 722
++ T V + P S S G
Sbjct: 829 SVVVTNVTTTINTPTTSVISMSG 851
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 484 SEANDSRKWKCND 496
SE ND W+CND
Sbjct: 58 SEFNDENYWQCND 70
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 889 PTPSSTLFQKPENSTSSIMFPASDVSVASTVSLFQNSDNI 928
PTP +TL Q EN + I+ A D + S +N+
Sbjct: 188 PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNL 227
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 23.8 bits (49), Expect = 8.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1167 GSPVPPSNSVGLFG 1180
G VPP+N VG+FG
Sbjct: 156 GKRVPPTNWVGVFG 169
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.8 bits (49), Expect = 8.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 321 PVVGATKESFAQKNIESSKDSVSAWSTKENFIQKSTD 357
P GAT E F + + WS ++ F +K TD
Sbjct: 309 PSDGATSEPFPFLMLPLGAGRPAFWSLRKAFARKKTD 345
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 23.8 bits (49), Expect = 8.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1167 GSPVPPSNSVGLFG 1180
G VPP+N VG+FG
Sbjct: 156 GKRVPPTNWVGVFG 169
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.309 0.123 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,392
Number of Sequences: 429
Number of extensions: 16512
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 18
length of query: 1251
length of database: 140,377
effective HSP length: 66
effective length of query: 1185
effective length of database: 112,063
effective search space: 132794655
effective search space used: 132794655
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)
- SilkBase 1999-2023 -