Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002151-TA|BGIBMGA002151-PA|IPR002130|Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
(147 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 199 8e-52
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 152 1e-37
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 126 5e-30
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 123 7e-29
06_01_0214 + 1634171-1634173,1634263-1634742 120 5e-28
02_01_0160 + 1116160-1116678 114 2e-26
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 111 2e-25
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 108 2e-24
09_06_0359 + 22508900-22509439 105 1e-23
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 103 4e-23
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 99 7e-22
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 98 2e-21
10_01_0309 + 3417602-3418147 90 6e-19
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 90 6e-19
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 85 2e-17
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 81 4e-16
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 76 1e-14
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 67 6e-12
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 55 3e-08
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 52 1e-07
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 48 4e-06
08_02_0053 + 11721658-11721689,11721960-11722710 34 0.053
02_01_0086 + 613113-613532 31 0.49
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 30 0.86
01_01_0077 - 585670-585787,585921-586687 30 0.86
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 1.5
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 27 6.1
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 199 bits (485), Expect = 8e-52
Identities = 90/145 (62%), Positives = 109/145 (75%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYG 60
MG +EMY+KHAP TCRNF+EL RRGYY+N FHR+I+DF++Q +SIYG
Sbjct: 18 MGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTGRGGESIYG 77
Query: 61 PHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVV 120
F+DEI +LKH GAGILSMANAGPNTN SQFFITLAP Q LDGKHTIFGRV GM +V
Sbjct: 78 AKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIV 137
Query: 121 KRIGLVECDKNDCPVDDVRIERAYI 145
KR+G V+ DK+D P+ +V+I R +
Sbjct: 138 KRLGSVQTDKSDRPIHEVKILRTVV 162
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 152 bits (369), Expect = 1e-37
Identities = 76/147 (51%), Positives = 89/147 (60%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYG 60
MG I L +Y + P T NF R GYY+N FHRVI+ FMIQ QSI+G
Sbjct: 504 MGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWG 563
Query: 61 PHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVV 120
F+DE L+H LSMANAGPNTN SQFFIT T WLD KHT+FGRV GM VV
Sbjct: 564 REFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVV 623
Query: 121 KRIGLVECDKNDCPVDDVRIERAYIPK 147
++I V+ DKND P DV+I +PK
Sbjct: 624 QQIEKVKTDKNDKPYQDVKILNVTVPK 650
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 126 bits (305), Expect = 5e-30
Identities = 59/139 (42%), Positives = 84/139 (60%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYGP 61
G + LE++ P TC NF+ GYYN FHR I++FMIQ +SI+G
Sbjct: 354 GDLNLELHCDITPRTCENFLTHCENGYYNGLIFHRSIKNFMIQGGDPTGTGSGGESIWGK 413
Query: 62 HFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVK 121
FKDE+ S L H+G G++SMAN+GP+TN SQFFI L+ KHT+FG V G+T +
Sbjct: 414 PFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLS 473
Query: 122 RIGLVECDKNDCPVDDVRI 140
+ V D +D P+++++I
Sbjct: 474 AMEKVPVDDDDRPLEEIKI 492
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 123 bits (296), Expect = 7e-29
Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELV--RRGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-Q 56
+G++++ +Y P T NF L +G+ Y + FHRVI+DFMIQ +
Sbjct: 99 VGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGK 158
Query: 57 SIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNG 116
SIYG FKDE L H G G++SMANAGPNTN SQFFI T WLDG+H +FG+V G
Sbjct: 159 SIYGRTFKDE-NFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFGQVIEG 217
Query: 117 MTVVKRIGLVECDKNDCPVDDVRI 140
M +VK I E D+ D P V I
Sbjct: 218 MDIVKMIESQETDRGDRPKKKVVI 241
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 120 bits (289), Expect = 5e-28
Identities = 59/145 (40%), Positives = 81/145 (55%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYG 60
+G I E++ AP T NF+ L GYY+ T FHR I+ FMIQ SI+G
Sbjct: 9 LGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWG 68
Query: 61 PHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVV 120
F DE LKH G++SMAN+GPNTN SQFFIT A L+G +T+F +V +G V+
Sbjct: 69 KKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAKVIHGFEVL 128
Query: 121 KRIGLVECDKNDCPVDDVRIERAYI 145
+ + D P+ ++R+ R I
Sbjct: 129 DLMEKAQTGPGDRPLAEIRLNRVTI 153
>02_01_0160 + 1116160-1116678
Length = 172
Score = 114 bits (275), Expect = 2e-26
Identities = 64/133 (48%), Positives = 75/133 (56%), Gaps = 12/133 (9%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELV--RRG--------YYNNTKFHRVIRDFMIQXXXXXXX 51
G+I++E+Y K P T NF L +G +Y + FHRVI +FM Q
Sbjct: 18 GRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRG 77
Query: 52 XXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIF 110
+SIYG F DE+ KH GILSMANAGPNTN SQFFI P WLDGKH +F
Sbjct: 78 NGTGGESIYGEKFADEVFK-FKHDSPGILSMANAGPNTNGSQFFICTVPCSWLDGKHVVF 136
Query: 111 GRVQNGMTVVKRI 123
GRV GM VVK I
Sbjct: 137 GRVVEGMDVVKAI 149
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 111 bits (267), Expect = 2e-25
Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 4/137 (2%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYGP 61
G + +E++ K AP RNF++L GYY+ T FHRVI+ F++Q +SIYG
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLFHRVIKSFLVQGGDPTGSGTGGESIYGA 81
Query: 62 HFKDEITSDLKHAGAGILSMANAG-PNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVV 120
F DE + L+ G+++ ANAG P++N SQFFI+L WLD K+TIFG+V G ++
Sbjct: 82 PFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKNTIFGKV-TGDSIF 140
Query: 121 KRIGL--VECDKNDCPV 135
+ L +E DK+D PV
Sbjct: 141 NLLALADIETDKDDRPV 157
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 108 bits (260), Expect = 2e-24
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIY- 59
+G I ++++ PLT +NF++L + YYN FH+V +DF+ Q S+Y
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLFHKVEKDFLAQTGDPTGTGAGGDSVYK 68
Query: 60 ------GPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLA-PTQWLDGKHTIFGR 112
F DEI DL+H+ G ++MA+AG N NASQF+ITL +LD KHT+FG
Sbjct: 69 FLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDKHTVFGM 128
Query: 113 VQNGMTVVKRIGLVECDKNDCPVDDVRIERAYI 145
V G + +I D P D+RI+ Y+
Sbjct: 129 VAEGFDTLTKISETYVDDKGRPFKDIRIKHTYV 161
>09_06_0359 + 22508900-22509439
Length = 179
Score = 105 bits (253), Expect = 1e-23
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELV--RRG--------YYNNTKFHRVIRDFMIQXXXXXXX 51
G++++E++ P T NF L +G +Y + FHR+I +FM Q
Sbjct: 20 GRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRG 79
Query: 52 XXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIF 110
+SIYG F DE L+H G G+LSMANAGPNTN SQFFI T WLDGKH +F
Sbjct: 80 NGTGGESIYGDRFADE-NFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVF 138
Query: 111 GRVQNGMTVVKRI 123
G+V +G TVV+++
Sbjct: 139 GKVVDGYTVVEKM 151
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 103 bits (248), Expect = 4e-23
Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 12/133 (9%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELV--RRG--------YYNNTKFHRVIRDFMIQXXXXXXX 51
G++++ ++ K P T NF L +G ++ + FHR+I FMIQ
Sbjct: 65 GRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIPSFMIQGGDFTLG 124
Query: 52 XXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIF 110
+SIYG F DE +KH G G+LSMANAG +TN SQFFIT T WLDGKH +F
Sbjct: 125 DGRGGESIYGTKFADE-NFKIKHTGPGLLSMANAGRDTNGSQFFITTVTTSWLDGKHVVF 183
Query: 111 GRVQNGMTVVKRI 123
G+V +GM VV +I
Sbjct: 184 GKVLSGMDVVYKI 196
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 99 bits (238), Expect = 7e-22
Identities = 54/108 (50%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 34 FHRVIRDFMIQXXXXXXXXXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQ 92
FHRVI+ FM+Q +SIYG F+DE LKH G+LSMAN+GPNTN SQ
Sbjct: 122 FHRVIKGFMVQGGDITAGDGTGGESIYGLKFEDE-NFVLKHERKGMLSMANSGPNTNGSQ 180
Query: 93 FFITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVECDKNDCPVDDVRI 140
FFIT T LDGKH +FGRV GM VV+ + + D P DV I
Sbjct: 181 FFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTSDVEI 228
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 98.3 bits (234), Expect = 2e-21
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 35 HRVIRDFMIQXXXXXXXXXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQF 93
HR+++ FM+Q +SIYG +F+DE LKH G+LSMANAGP+TN SQF
Sbjct: 105 HRIVKGFMVQGGDITAGDGTGGESIYGLNFEDE-NFVLKHERKGMLSMANAGPDTNGSQF 163
Query: 94 FITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVECDKNDCPVDDVRI 140
FIT T LDGKH +FGRV GM VV+ + V ++D P+ D+ I
Sbjct: 164 FITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPITDIVI 210
>10_01_0309 + 3417602-3418147
Length = 181
Score = 90.2 bits (214), Expect = 6e-19
Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 15/137 (10%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELV------RRG----YYNNTKFHRVIRDFMIQXXXXXX 50
+G++++E+ P T NF L R G +Y + FHRV+ FM Q
Sbjct: 24 VGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFMCQGGDITA 83
Query: 51 XXXXX--QSIYGP--HFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGK 106
++ G HF DE + +KH G G++SMANAGPNTN SQFFIT+ WLDG+
Sbjct: 84 GNGTGGESALDGAARHFPDEGFA-VKHDGPGVVSMANAGPNTNGSQFFITVDKAPWLDGR 142
Query: 107 HTIFGRVQNGMTVVKRI 123
H FGRV GM V+ I
Sbjct: 143 HVAFGRVVAGMGAVRAI 159
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 90.2 bits (214), Expect = 6e-19
Identities = 54/115 (46%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 28 YYNNTKFHRVIRDFMIQXXXXXXXXXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGP 86
YY + FHRVI+ FM Q +SIYG F+DE L+H G+LSMANAGP
Sbjct: 58 YYKGSLFHRVIKGFMAQGGDFSNGDGSGGESIYGGTFEDE-NFVLRHDERGLLSMANAGP 116
Query: 87 NTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVEC-DKNDCPVDDVRI 140
NTN SQFFIT LD K T+FG++ G V+KRI V+ PV VRI
Sbjct: 117 NTNGSQFFITFKHNSRLDRKSTVFGKLILGNDVLKRIEYVDVHGAGSTPVVPVRI 171
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 85.4 bits (202), Expect = 2e-17
Identities = 52/133 (39%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELV--RRGY--------YNNTKFHRVIRDFMIQXXXXXXX 51
G+I++ ++ P T NF + +G Y T FHR+I FMIQ
Sbjct: 54 GRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHRIIPGFMIQGGDTVSG 113
Query: 52 XXXX-QSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIF 110
SIYG F DE + H+ G+LSMAN +TN SQFFIT LDGKH +F
Sbjct: 114 NGTGCDSIYGGMFPDE-NFKINHSAPGLLSMANYAKDTNGSQFFITTVKLTRLDGKHVVF 172
Query: 111 GRVQNGMTVVKRI 123
G+V +GM VV +I
Sbjct: 173 GKVLSGMDVVYKI 185
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 81.0 bits (191), Expect = 4e-16
Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELVR--RGY-YNNTKFHRVIRDFMIQXXXXXXXXXXX-QS 57
G+I++ ++ + P T NF L +GY Y FHR+I+DFMIQ +S
Sbjct: 80 GRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSFHRIIKDFMIQGGDFQNNNGTGGRS 139
Query: 58 IYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFI 95
IYG F DE LKH G G+LSMANAGP+TN SQFFI
Sbjct: 140 IYGECFDDE-NFTLKHTGPGVLSMANAGPDTNGSQFFI 176
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 75.8 bits (178), Expect = 1e-14
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 63 FKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAP-TQWLDGKHTIFGRVQNGMTVVK 121
F DEI +L+H+ G ++MA+AG N NASQF+ITL +LD KHT+FG V G +
Sbjct: 108 FDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTIT 167
Query: 122 RIGLVECDKNDCPVDDVRIERAYI 145
+I D P D+RI Y+
Sbjct: 168 KINETYVDDKGRPFKDIRIRHTYV 191
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 66.9 bits (156), Expect = 6e-12
Identities = 46/133 (34%), Positives = 66/133 (49%), Gaps = 31/133 (23%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELV-------RRG---YYNNTKFHRVIRDFMIQXXXXXX 50
+G+I++ +Y P T NF L +G +Y ++FHR+I FMIQ
Sbjct: 51 IGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIPGFMIQGG---- 106
Query: 51 XXXXXQSIYGPHFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIF 110
D + D K +++MAN+GP++N SQF+IT T WLDG+H +F
Sbjct: 107 --------------DIVRGDGK---GSVIAMANSGPDSNGSQFYITTIKTSWLDGEHVVF 149
Query: 111 GRVQNGMTVVKRI 123
GRV GM V I
Sbjct: 150 GRVIQGMDYVYAI 162
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 54.8 bits (126), Expect = 3e-08
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYGP 61
G I +E+Y + F+ L + ++ F VI++F+IQ + I
Sbjct: 103 GSITIEIYKDASADVVDRFVSLCKSNHFKGMPFRHVIKNFVIQGGDFDFNGAAQEWILKA 162
Query: 62 HFKDEITSDLKHAGAGILSMANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVK 121
E KH I + N PN FIT AP L+ K +FG+V NG +V+
Sbjct: 163 KASGENALSPKHEAFMIGTTKN--PNNKGFDLFITTAPIPDLNDKLVVFGQVINGQDIVQ 220
Query: 122 RIGLVECDKNDCPVDDVRI 140
I V+ D++ P + I
Sbjct: 221 EIEEVDTDEHYQPKTPIGI 239
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 52.4 bits (120), Expect = 1e-07
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 13 APLTCRNFMELVRRGYYNNTKFHRVIRDFMIQXXXXXXXXXXXQSIYGPHFKDEIT---- 68
AP T + +LVR G YN F RV + F+ Q + ++
Sbjct: 95 APKTVEHIYKLVRLGCYNTNHFFRVDKGFVAQVASVVGGRTAPMNDEQQEEAEKSVVGEF 154
Query: 69 SDLKHAGAGILSMA-NAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRI 123
S +KH GILSM ++ PN+ S F I L LDG++ +FGR+ G ++++
Sbjct: 155 STVKHV-RGILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKL 209
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 47.6 bits (108), Expect = 4e-06
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 2 GKIMLEMYWKHAPLTCRNFMELVRRGY--------YNNTKFHRVIRDFMIQXXXXXXXXX 53
G+I +E++ P T NF + + Y +FHRVI+DFMIQ
Sbjct: 51 GRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDG 110
Query: 54 XX-QSIYGPHFKDEITSDLKHAGAGILSMANA 84
SIYG F DE KH G G+LSM +
Sbjct: 111 TGCTSIYGTKFDDE-NFIAKHTGPGLLSMVRS 141
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 92 QFFITLAPTQWLDGKHTIFGRV-QNGMTVVKRIGLVECDKNDCP 134
QFFIT A +WLD KH +FGRV +GM V++I V N+ P
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRP 243
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 33.9 bits (74), Expect = 0.053
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 18/134 (13%)
Query: 1 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRD--FMIQXXXXXXXXXXXQS- 57
+G+++ +Y + PLT NF Y T H++++ F+ Q
Sbjct: 127 LGRVIFGLYGRLLPLTTANFKAACTSAAYRGTLVHKLLQGQFFVAGRQGPRRDRGEVQPP 186
Query: 58 ---IYGPHFKDEITSDLKHAGAGILSMA----------NAGPNTNASQFFITL--APTQW 102
+ D +LKHA G LS+ PN + +F +T P
Sbjct: 187 TGLVRNAETIDPKAFELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTTGPGPCPE 246
Query: 103 LDGKHTIFGRVQNG 116
LDG++ +FG V G
Sbjct: 247 LDGQNIVFGTVLEG 260
>02_01_0086 + 613113-613532
Length = 139
Score = 30.7 bits (66), Expect = 0.49
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 81 MANAGPNTNASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRI 123
+ N N SQFF T P W DG + +FG + +G +K I
Sbjct: 75 LPNGSAENNISQFF-TRVP--WFDGNYVVFGCIISGFHNLKAI 114
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 3 KIMLEMYWKHAPLTCRNFMELVRRGYYNNTKFHRVIRDFMIQ 44
+I+L+ Y +AP+T NF++LV R +Y+ + R F++Q
Sbjct: 281 RIVLDGY--NAPVTAGNFLDLVERKFYDGMEIQRA-DGFVVQ 319
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 29.9 bits (64), Expect = 0.86
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 89 NASQFFITLAPTQWLDGKHTIFGRVQNGMTVVKRIGLVECDKND 132
N ++F IT LD + GRV +GM V+ +I V K++
Sbjct: 206 NGTEFVITTGDAPELDASALVVGRVVDGMDVLGKIAAVPTVKDN 249
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 96 TLAPTQWLD------GKHTIFGRVQNGMTVVKRIGLVECDKNDCPVDDVRI 140
+L+PT +L+ KH +FG+V GM ++K++ V D P +V+I
Sbjct: 78 SLSPTPFLNVSTSCVSKHVVFGKVVTGMPLLKKLEAVGSDTGK-PTCEVKI 127
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 100 TQWLDGKHTIFGRVQNGMTVVKRIGLVECDKNDCPVDD 137
T+W T+ V T+VK + +VE DKND + D
Sbjct: 481 TRWSSHYKTLKSLVGMFATIVKVLEIVEKDKNDWKIRD 518
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.140 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,080,594
Number of Sequences: 37544
Number of extensions: 141937
Number of successful extensions: 340
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 34
length of query: 147
length of database: 14,793,348
effective HSP length: 76
effective length of query: 71
effective length of database: 11,940,004
effective search space: 847740284
effective search space used: 847740284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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